RNA id: XM_039825379.1


Basic Information

Item Value
RNA id XM_039825379.1
length 4264
RNA type mRNA
GC content 0.49
exon number 32
gene id LOC120574884
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8073505 ~ 8085943 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACACTGCGGACTGTAAACAGGAAGCGTGTGTCTCGCGCCGGTTAGTATGGTATGGCTCTGTGGTACGTTACTGCTGCAGTGTAGTAATCCCTCAAACATGACCCTTGTGATTTTCCTTTTGCTGTGTGTACAGCACAAATCTATAACTTTGTAATGATAAGCATACGGTTAGTGTTAGAAGACTGAATTAGCGTAGGTTTGCAATATGGCTAGCTAACGAGCAGCCTTGTCAATGTGTAGCAACGGTGTTCCTCCAGGTTCGTTTCAATGTTAACTTAACGGCGTCGTaacttaacgttaacgttactgtaagtaaaagGGGCAACTTTAAAATGCTAAACGACTAACTTCAAGCATGAACCAATACGACGTGTAACCATATTAACTAACGTTAACTACaagcgtgtgtgttttttattgaacGCTCATcgatgtagctagctaacaagACAGGTTACCAATGGAGACAGGAGACGCCTAATCAGATTTAGCTTGCTAAATCAGGttagctaggtagctagctacactCAATTGAACGCTACCAGGAGAGATTCAACATGGCTACAAAGTTGAAGAGCAAACCATCCAAAAGTTCATTCGGAGATGAAGATTTGCTCGACAGCTTATTTGATGATAAAAAACTCCCAGTAAGGGGGAAAGCAAGTCGCCGTGGACTACTGAATCGCACTTCTGCCACGGATAACATCTTCAGTATGCTAGCAGAGGAGGTAAAAAGGGATGGTGGAGACACTGAGGACTCTGATGTCTCAGCAGCTGATCCCAATGACATACTGAAGAACATGAAGGATATGGATGATATGGATGCTGACCTTTTTGCATCAAAGAAAAAGCCCAGTTCGGCTCCTGCACAAACAAAGCCGTTTGGCAATGAAGGGCCAAAGGAAGACTCGTCCACGTTAGAAAGCAAAGTAAAACCAGAGGGAGCAGATGAACCCAGCACAGAAGGGAGGAAGCCTAACTCTGCACCTTCGTCTACATCACATAAGTACAAGAAGTACAGCTTCTCTGACAGtggtgctgatgatgatgaaggtCTTGGTCAGACACCTTACGATAAAGATCTAGACGATCCCTTGGCTGATCTACTTGATGACTTGCTTCCAGATGAAACCAAGCCCGAACCTAAATCTAGCATACAGCAGGCCAAACCTGAAAAATCGGTGCCATCTCCTTTAGCATCTCCTATCCTAAAGACTGAAACATCTAAGGCAGCAAAAAAACGAAGCGATGTTACGTTTGATGACGATAAAGATGACCTCATGGATGCACTCGGATTTGACAGTGATAAAAACAATCccaagaaaaaagagactgtgctttGGTCCAACAAGGGAAGGAGTGAGACCCCTCAGAGACCTCGTACTAAACTAGATGAGATTCTGGAGAGTTTGACTTCACCTCGTCTTCTGGAGCGACCTCCGACGGGCGAGAGGAAAGACCAGCCTCAGTCTCAAGAGAAGCAGCAACACGAGAAGACCTTCAGTGTGAAAGAACCACTTCTAGAAGATGACCTCACATTTGGCTCCTATCAGCCCACGCTGGGATCCACGCCGAGGCGCCAGTCGCGCAGACCGtctgtcagATTTTCTACAGATGTCAATCCCTCTACcccagagaaaaaaacaaaacccaccACCCCCACAAGGCACCGCAACTCAGCTGACTGGCTAGGCCTCAAGACGAAAGACGACCACTTTTCAGAGGGTGATGCCAAAGGGACTTCAACAGAGTCTCCAAAGACTCCTTCCTCTCCTTTATTAGAGAGAAGACCCTCCCTGACTGGTAATCATGCCACGTCTGCTGCAAAAATGCCAGCCTTAACTGAAAATATCACCAAACATACCAAGCCAGAGATCTCTAAAAGCCagcagaaagaggaggaggaggaggaggatggtgATGATTGGTTAGCAGGAGCCTTGAGCAGGAAGAAGGCTATGTCAGTGTCAAACTCTGAGGCAAAAACAACCAAGCAGGAAAACTTTTTAGCCCTGGGGGAAGAAATTAATCTGGAGTCGACAGTTagTAAACAAGTCACTTCACAAGCTCCCAGGGGCAGAGAGGACACTCTTACATCTGTCAAGGAAACTAGCACTTTTCTTGGTCAGCCCAGCCCCACTGCTCACTCCACTCCTGTCAGAGAGACGAGGACCAAGCCAGATCGCCCTCCTCAATTTACTGGTCCTTTGCCAGTCCATGCTGCTAGCATTAGCCACGCCCAACCCCAGCCTCAGTCCCAACCTCATCACCTACCATCCAATAATGGATCCGGGGTGCAAAGAGGGCCCAGTCAGCTGCAGTTGATCAACCCTATCTCTACTATACCGCCTGGCTCAATGTGGTCCGTTCCACAGCAAAATGCATCAACTGCTGTCCAACAACAGGTGACACTTTCAGCAGACAGTCTGCAGCAGCTGCTTCTACAACAGCAGATGATGCAGTCTCAGCTGCTGTGTCTCGGTGGTGTTGTGGATCCAGGGGTCCTGCAGAGACtcaaagagagagagcagcaacCTGGAGATTATCCAGTTTTACAGGCTCGCATCATCCAACTGGAGGGACAGGTGAAGACATTGCAGCTGGAGCGAGAGCAAAGCCAAATGTTGCTAGAGAGTGTCCAGCAGCGGCATAAACAGGATATGGAACTCATGGAGAACACACACAAGGCTCGTGTGAAGCTGCTTGAGGAATCGGCAGCCCAGAGGGAGACACAGGCGCGGCAGGAGTGTGAAGACCTAATGGAACGTCTGGCCACTGTAACACGATCAGCTGAGCAGGAACGCTCCGAGCTGCAGAACCAGTACCAGCGCAAACTGGCCATGGCCCAGCAAGACAGAGACCGCGAGGTGGAGAGACTCAGAGACCTGCAGAGGAAATCTGTCTTGGAGATGAAGAAAGACCACGAGGACCAGGTCCAGAGGTTGAAGAAATTAAAGGACGAGGAGATTGATGCAGTTACAAGCGCAACATCTCAGACCAGgtCTCTTACAGTGGTGATTGAGCAGATGGAGCAGTTCTCCTCTCGGCTGGGGGACATTTCTTCTCGGGTGGAgagcacacatgaacacacgGCTCATGGCCTTGAGCAGGGGACACGGCACAGAGACGAGCAGCTTCGAATGATGCAGGACCGTCTGGCCCAGCAGCAGAAAGCCATGGCGGAGGAGAGATCGTACCtcaaggaaatcatttccaggATGGACACACAGCTCAATGAGCAGCAGAGACAGCTCGAGAAGGAGCGCTGGAAGATAACAGCAGAGCAGGCCAAGGCAGAGTCAACCCAAAGAGGCCTTGAGGGAGAGCGACATGCCCTTAATATGCAGATCAACATGGAAAGAGAGGAGCTGGAGAGAGCTAAGAGTGCACTACTGGAGGAGCAGAAGTCAGTGATGCAGCATTgtgcagaggagaggaggaagctgGCAGCTGAGTGGGCCCACTTCCACGCCATGGAGAAGCAAAGGCATGAGAGGGCTGAACGGGATATCAGCAGTCTCTTGGAGAAGAGAGAGGGCTCCATCATCAGTCTGGCACAGGAACAAGCTGACTTAAAGCTTCACACTGCAGAGCTGAAACAAAAGGAGATGGCTGTggcacaggagagagagactctggaaagactgagagaagaactggacagagagaaagagagaataaGCAGCACAGCCTTGAGACTCAAGACACGAGCCCAGGAGGTGGAGGCCTTTAGCAAGCTCGCGGCAGAGAAGTTtgaggaaggagaaggagcaTTGCAGGAGGCAAAACGCGTGGAGGCTGAGCACGAGGCAAGGCTCAGAAATATCCACTCCCAGACAGAGTGGCTAAGGCAGCAGGAACAACGAATCCTTCAGGAGCGAATGCGGTTAAGTCATCTGCAGAAGGACACAGAGAGGCTGCAACTAGACACTCCGATTACCTCTTTAGCACAAATGATTCCACCCACTTTACCAGaTGCAGGTTCAGTGTTGCCAAACCCTGAGCTGTCATCGACCCTGAACATTCCCCCTCCTACTTCATTTGCCAACTCGCAGTCCATGGCTCTACAGGCTAGTCTGGCTCTGTGGAAGTACACTGCAGAAAAGGACCGTGAATACCTCCGAGATGAGCAGATCTTTTTAGAGAATTTGAAGAAGAAATCTTACAAGTTGCCCTTCGCAGATTGATCTAGTAGGATTTGTTACTTTGTGTGCCATAATGCTTGAATTTTTATACATCTTATTAAACATGTTTCAgagcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641917.1 lncRNA downstream 7225 8063001 ~ 8066280 (-) True LOC120574882
TU207007 lncRNA downstream 448427 7570643 ~ 7625078 (-) False grin2aa
TU207003 lncRNA downstream 448511 7569718 ~ 7624994 (-) False grin2aa
TU206913 lncRNA downstream 594891 7478319 ~ 7478614 (-) True G152756
TU206905 lncRNA downstream 703652 7367794 ~ 7369853 (-) True G152748
TU207058 lncRNA upstream 1983 8087926 ~ 8092269 (-) False G152863
TU207059 lncRNA upstream 1983 8087926 ~ 8092269 (-) False G152863
TU207063 lncRNA upstream 1983 8087926 ~ 8092269 (-) False G152863
TU207064 lncRNA upstream 1983 8087926 ~ 8092269 (-) True G152863
TU207139 lncRNA upstream 205957 8291900 ~ 8292215 (-) True G152924
XM_039825376.1 mRNA downstream 2363 8051991 ~ 8071142 (-) True LOC120574881
XM_039824323.1 mRNA downstream 109110 7933459 ~ 7964395 (-) False epn2
XM_039825384.1 mRNA upstream 7109 8093052 ~ 8100398 (-) True LOC120574885
XM_039825025.1 mRNA upstream 29031 8114974 ~ 8115999 (-) True rasd4
XM_039823725.1 mRNA upstream 51641 8137584 ~ 8141831 (-) False LOC120573855
XM_039823723.1 mRNA upstream 51641 8137584 ~ 8141827 (-) True LOC120573855
XM_039823722.1 mRNA upstream 51644 8137587 ~ 8141833 (-) False LOC120573855
TU206683 other downstream 1352862 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 1845391 6182408 ~ 6228114 (-) True G152441
TU206279 other downstream 2459837 5574680 ~ 5613668 (-) False atp5mf
TU207167 other upstream 355236 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 645454 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 726399 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 767817 8853760 ~ 8856957 (-) True tufm
TU207546 other upstream 767817 8853760 ~ 8857571 (-) False tufm

Expression Profile