RNA id: XM_039825390.1


Basic Information

Item Value
RNA id XM_039825390.1
length 629
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC120574889
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 4355685 ~ 4358977 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aagagaaagagagagagagagagagagagaagagtgacAGAGCTGTTGAAGAAAAAAGAAGCTGAAAGATGAAGACTTTGGCCGTCCTGGTTCTCTGCTCCCTGGCTGTCGTCTGTCTGACTTCAGATGCCTCCACTGGCTCCCAGCCTGCTGACAACCCTGCTCAGGAGGGTTTGTTTGTGGAGAGGGAGCAGGCCTCCGCTGTGGTGAGGCAGAAGAGAGCTGCTGGAGAGTTAACCCTGACCCAGCTGGAGAGCCTGAGAGAAGTGTGTGAGGCCAACTTGGCTTGCGAGGACATGATGGACACGCAGGGAATCATCGCCGCCTACACCGCCTACTACGGACCCATTCCCTATTAGAAGCCAAACCGCAACGACCGATTTTCTTTGCAGTTAAGCCACTCACAAAATAAGCACGAGAATACTTTTCCAAAAAAGTGTTTCAAAGTTTTgacaaacattaaaaagtgaGAGATGTGGGGTTAAAGATGGaagcagatgtgtgagaggaaTAACATGTGAATGTATTTTCCCATCCTGCATACAGACCTACACAATTCTCTCTATAATTCTATTATTGCTGTTTGCCTGTAGAGTAGTGCGATGACATTAAAATACACATAAATCAAA

Function

GO:

id name namespace
GO:0031214 biomineral tissue development biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641833.1 lncRNA downstream 18461 4334272 ~ 4337224 (-) True LOC120574176
TU205520 lncRNA downstream 87031 4268330 ~ 4268654 (-) True G151691
TU205521 lncRNA downstream 87031 4268330 ~ 4268654 (-) False G151691
TU205459 lncRNA downstream 190187 4130804 ~ 4165498 (-) True G151639
TU205452 lncRNA downstream 272004 4082918 ~ 4083681 (-) True G151633
TU205640 lncRNA upstream 52539 4411516 ~ 4413160 (-) False G151783
TU205642 lncRNA upstream 52539 4411516 ~ 4413160 (-) False G151783
TU205643 lncRNA upstream 52539 4411516 ~ 4413160 (-) True G151783
TU205629 lncRNA upstream 65535 4424512 ~ 4433861 (-) True LOC120575466
TU205645 lncRNA upstream 118407 4477384 ~ 4478879 (-) True G151785
XM_039823818.1 mRNA downstream 4591 4347972 ~ 4351094 (-) True LOC120573904
XM_039824373.1 mRNA downstream 31044 4314794 ~ 4324641 (-) True LOC120574171
XM_039826259.1 mRNA downstream 41349 4305836 ~ 4314336 (-) True ddx47
XM_039824647.1 mRNA downstream 52026 4217336 ~ 4303659 (-) False LOC120574358
XM_039826264.1 mRNA upstream 5511 4364488 ~ 4367343 (-) False LOC120575464
XM_039826261.1 mRNA upstream 5511 4364488 ~ 4367343 (-) False LOC120575464
XM_039826265.1 mRNA upstream 5511 4364488 ~ 4367323 (-) False LOC120575464
XM_039826263.1 mRNA upstream 5511 4364488 ~ 4367321 (-) False LOC120575464
XM_039826271.1 mRNA upstream 58999 4417976 ~ 4464991 (-) False LOC120575466
unassigned_transcript_716 other downstream 325425 4030179 ~ 4030260 (-) True trnas-aga_11
TU205089 other downstream 1038770 3311727 ~ 3316915 (-) True G151344
TU204921 other downstream 1440318 2911326 ~ 2915367 (-) True G151227
TU204905 other downstream 1459342 2873918 ~ 2896343 (-) True G151216
TU204751 other downstream 1756703 2596802 ~ 2598982 (-) True G151146
TU205621 other upstream 2871 4361848 ~ 4367333 (-) False LOC120575464
TU205622 other upstream 2871 4361848 ~ 4367333 (-) True LOC120575464
TU205631 other upstream 57200 4416177 ~ 4428301 (-) False LOC120575466
XR_005641996.1 other upstream 59749 4418726 ~ 4464991 (-) False LOC120575466
XR_005641995.1 other upstream 59991 4418968 ~ 4464991 (-) False LOC120575466

Expression Profile