RNA id: XM_039825406.1


Basic Information

Item Value
RNA id XM_039825406.1
length 8580
RNA type mRNA
GC content 0.57
exon number 19
gene id si:ch211-194b1.1
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2355442 ~ 2433220 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTACGCACGCAGCCGTGGCGTTGCCTTGCAAGCCCAAATAACATGGAGTCCTCTGCCTGGCATCTTCCAGGGATCCGTGCAGCGGACCAGACCTGAGCAGCgacccagagagagagcgagtTCCCCCGGCGGTCAGAGCCGCAGGAGAGCATCGTCTCCGGGGAGGAAAAGAAAGCGCCAGGTCCGTTCTGAAAACTATGGCGAACGGTGCTTAAAGCAGACCGCTTTTCACTGCGACCCGCAAACCAGGCCGATTTCAAAGAGGCAGCTGCACAATGTAGGGAGGCTGGTCGCCAGCGGGACTCCATACTGTTCTCTGGGGGGGGTGGACCATGGAGCCAGAAGGGCGACCCCTAACCCCAGGGACCAGCAATGGGCCCCCAGCCTGCAACTCGGCACAAAACCCCGTCACCTCCACCTTCTCAAGCTGCACCTTACAGTCCTCATGTTCTCTGAACGTTTGGGACGGCCGGATGTCTGCCAAACGCTCGTGGGGCCACGCCAGAGATGAGGGCCCCGAGCAGAGTGAAGGCCCCCGGCCCGGTGCAGAGCCAGGGAGGAGCGCACAGAGGAGAGCCAGGTCCTCAGCCTTTCCTTCCTCCCTGAGCTGGGACTCGGACTCTGAGAAAGAAACGCTAGATGAGGAGGAGCTACAGCACTTTTCTAACCCTCACGGTCTGGCTGCTCACAGCCCAGGATCTCCTTCTTCTGGACTcagACTTGATAGTGAAGATGACCAAGAACCTGGACAGCAGCACTTGCATAAGACTAACTCGTCCCCGTCTGTGGTGGGGCACGACGGAAACAACGAGAGCACAAAGACAGAAGAGCCAAATACATCTCAGCTTGGCCCGACAGACTTGGCAGACGGCGACACGTGGAATGTATCTGAGGGAGCCAAGCTGTTTCTGTCCAAAGTAAAACCAAAGGAAGGTTGCCaaatagaggaggaggaggaggaggaggaggaggaggaggaggctgataACAACGAGGGAGAGAAGAGGCCCAAGGGAAAAGAAACCACAGAGCCTGAGAGAGATGTGTATACCTTCCCCGGAGACTCCGACCCCGAGAGTCCCCCTCCCGCGCCCTGGGCTCATTGTACATTCATTCAGCGGTGCAGAAAGAAGAGGGTGCTGCTCAGGCCCTTCTCCGGACTCGGCACCTTGAAGCGCACATCGCCTGGGACTGGCAAGTGGGCAGGAGTTAGTCCTCCGAAATCCAAAACAACCGGGACGGCGCAGCTGAGTCGAGGTGCAGGGGTTTCTGAGTTTGAAGAAGAACCGATAAACctcagagagggaggagggaaaagAGACAATGAAGAAGAAATGGGGGGAGAGCCAGGCAATGAAATCTTCACCTGTGTGGAGTGTAGCATTTACTTCAAAAAGCAGGTCCACCTGCAGGAGCACATAGTAGAGCATTGTCAGAGCAGCACAGGGGGGGGCAGGCGATTAGGAAAGGGCGCCCGTTTCCGATGTGTCGAGTGTGGCTGGAACTTGCCGAATCGGCTCGCGCTTTCAGACCACCACAGACGGCACCAGGAGTCCCGCCTTAAGATCTTAGGGGAGATTGAGAAACTGAATGAAAACGGCAGCGCGAGAGACCTTCAGAAGCTCGACAGCAAGACGGCGAAGCACCGAAGCTCGGACGCGGCGGCTATTGTGCACGATGTGAGCGCGGCCTCGATTCCAGGCAAAATGTCCGACCCAGAAATAGTCACGTCTCCACCTCTTTCCCCGGTTTCAACACCAGATGCAGTCCCAGCAGTTCTTGACGCAACTCCTCCGAATTCAGTTCACACTCCAGCTCGGGCCCGAGCTGTTTCCGCCGGACGCCGCCGTTTCGTCTGCACCAAGTGTAGCTTCAGCACGAGAACGCCCCAGGCGCTGGCTAATCACAGCAAGACCCACAACAGGAAAGAACCAGCTCCCCCGGCTGACTCTCCATCATGTTTGGCATCCAGCTCCCTGGCCTGTGGTCATTGTGCTTTCCTGACCTCGAGCCCAACTGCAATGAGGGAACACCAAAAGCTTGTTCACCCAGGACAGGCAGCCATCGGCGGGGCGCAGGCCCATGAAACTGGCCAGAATTCGAGGTCTAATGTTGGGGCGCAGGCCCATGAAACTGGCCAGAATTCGAGGTCTAATGTGGTTGTTCACATTTCAAAACCCGCTCTAGAGTCTGAACATTTCTCTGGGCCGGGATCTGGATCTTCGCCCGATGCAACTCGAGGCGAAAGCCAGCCAGAAGCCGCTGCCTCCGAAGACCGCACAGTGCCAGACGGCGCTGTGGTGGTCGTGTCCAAGTGCGCTGGGAACGGGAGACTCTGCAGAAGAGGGAAGACTTGGACGGATCTGGACAAGTTTCTGGACCATGGCAAGCTGACCGGGAGtgaagaggaagagcaggacGAAGATCGGAGCACAGAGCGCGACACCGAGTATACACAACACGACGACAACTTGCCTGTCGGAGGGAAACGGCACACCAGATCACGAGCCAACACAGACGACTGCTCCGCACAGCACACTGCTGCGTTATCGCTCCCTCCCGAGAAGAGTGTGAAGGAGGAAGACGAGCTGGACGTGGAGAAAGATGGGAGTGGTTTCTGTTTGAGGCGGAGCCAACGCGTTATCGCCGCTCCGGCAGAAAGTGACAGCGATGACGAGGAACGTGTGCGACGTTTCCTTTCAGAGGGCATCTTGGACGAAGACCCAGACGAGACTGACGAGGACTCGGAGTCGCTCAGGGGCGTGGAGAGGAAATGCCCCTACTGCCCCGATCGATTTCACAACGGCATCGGGCTAGCCAATCACGTGAGAGGCCACCTGAACCGAGTGGGCGTCAGCTACAACGTGCGGCACTTCATTTCCCCCGAGGAAGTCAAAGCCATTGAGAAGAAGTTCTCCTatcagaagaaaaagaaaaaagTTGCCAACTTTGACCCGGACACGTTCAGCGTGATGCACTGTGAGTTCTGTAGCGCCGGCTTCGACACCCGGGCCGGCCTGTCCAGCCACGCCCGCGCCCACCTCCGCGACTTTGGCATCACCAACTGGGACGTTACCATCTCGCCGATCCACATCCTGAGGGAGTTATTCTCCAGCCGGCCCGATCTGGTGATCCCCACGGCCCCCCCTCGGAGCCCCGGCTCATCGCGGGACGATGGCGAGGAAGACGAGGAAGACGAGGAGGAAGGGGAGCGAATCGTCGAGGTAAAGCTAGAGCAGGAGACGAGTGAAAGGACGCTGAGCGCTGCCGCTACTGATGCCGTTACTTCGGCGTCTCCTCGACACTGCAAGCAGGAGGACGCTGAAGGAGAGAGTAACGgcggggaggaggaggaagaggatgaggagCAGCTACAGCTTCCAGCTCTGGATGCTCTGAGCTCGGGGGAAACCGGGCAGCGCAGCGCCAACTCAGACGGCCTCTCTCCTGGAGAGGATGCCGACTCCAAGgTCCACGACTTGAAGTGCGCGGTGTGTGGAGCTCAGTTTGAGACCAGACGAGGACTGTCCAGCCACGCCCGCTCCCACTTGCGCCAGCTGGGCGTCGGCGTTTCCGAGAGCAGCGGCGCGCCCATCGACCTCCTCTACAAACTCGCCAAGGAGCGCAGCAGCGCCGACGGCCAGATCGGCTCGTCTCCTCCGCAGCCTCTTCCAGCCGAGAGCCTCTCGCCACCAGTTCCTCAGAAAGATGAGGCGCTAGGAGACATGGACTTAGACGAGAAACCCATCCCTCTCTCAGTCCTGGCCAAAGCAGCCAAAGCAGTGCCAccaccctcctcttcctcgccAACGCCTCCTCTTGGCGCCTCTCCGGCTGGGCCTCCTCATCCCGGCCCCCCTCCCTCGGTGGTGAGGAAAGCCCCCATCTCCTCTCTGCTGCCGGTGTCTTCCCTGCTGCGCTCGGTGGAGCACAAGGCCACgggaatgaaaggcttgatgtCTAACCTCTCGGCCTCGGCCGCCGTCGCAACCAAACCCATGTGGGCGCCACAGGAGGATGACGCTCCGCTCAACCTCaCGCTGGAGGTGAACCCCAACAAGGACATCGTTTGTCAGCTGTGCGGCGCCTGGTTTGAGACTCGGAAAGGCTTATCCAGCCATGCACGAGCCCACCTGCGGCACTTCGGCGTGGAGTACTCCGAATCCAAGGGCTCTCCCATCGACCTGCTGAACCAGCTCATCGATACGGACGTCTTCAAGCACAAAGCCGGCTCGCTGCAGCGCGACAGCCACGGCGCGGAGCCCCGGGGCCTCGGCGGCACCAAGCAGTCGCTGCACGGCCTCTCGTCCTCGCCGTCTCTCCTCTATAAGGTCACCACAGCCGGGGGAGGCTCCACGTCCAAAGCTACCTCTTCCTCTGCCTCGTCGCTGCTGCTCGGCCCGCCCGCCAAACGCCACAAGTCCTCCTCCATGAGGGTCTTCCGCCTGAGCAGTGGCGAGCTCATGGCGCTTCCACACAGCGACCCTCCGAAGGAAATCGGCTGCGAGTTCTGCGGGGAGTACTTTGAGAACCGTAAAGGCCTGTCCAGCCACGCCCGCTCCCACCTGCGCCAGATGGGCATCACCGAGTGGTCTGTGAACGGCTCGCCCATCGACACCCTGAGAGAGCTCATCACGAGACGGGGCCTGCCTTGCGCTCTGCCGCTCAAACCTCTCAAAACTCCTCCGAGGTCCTCTCCCGGGCCCCCACGCTCCCCTCTGCcggcctcctcctctccttccgcTACCCTCCTAGGTCGCCTACCATTCGCCTTCGCCCGGCCCAGCAGCCCGGCGCCGTCCGCGGCGTCCAAATCGAGCTCGGCCACGCCTCCGACGTCTTCCAGCGGGCTGATCCTCAAGCTGAAGCCCGAGCCGGTGCAGCTGGACGTCACGGCGCCCAGAGCCGTGGCGAGATCTGCCGGCTTCTCCGGTGAAGCTCTCAGCTGGAGCAGCTCTGACTCGGCGTTCCCCCTCAACCTGGCCATGTCCCACGAAGTGGAGCCTACGAGAGACATTCGCTGCGAGTTCTGCGGGGAGTACTTTGAGAACCGTAAAGGCCTGTCCAGCCACGCCCGCTCCCACCTGCGCCAGATGGGCATCACCGAGTGGTCTGTGAACGGCTCGCCCATCGACACCCTGAGGGAGGTTATGCacaagagaggggggggcgCCTCCTCTAACTCGGACCAGGGGGTGAAGAAAGAGGCGAGCCACGGAGCCAGCAGCCCGCTCTGGGAGAACTCGGAGGGTTTGGGTGTTTCGGGCTACCAGTCGGGCGCCAAATTCCGAAAATCTCCGCTCAGTTTGCTTCAGTCGGGGTCGCGGCTCCATAAGCAGGGCCTGGGCTCCGGGTCTGGCGCTCTGCCCGCAGGGAAGTTTTTTCGGCTGTCCCCGCTGGGGAAAAGGCCTCTGTCTGACGAGGGCCAATCAGCGGAGAGCAGCGCCCACTCGCCGCCGCATCAGCCTAAGACTTTCTCACCTCTGCCACACGATTTCTCCTTCAAAAGGAAACCCTCCCCAGACAAGCACGGACACCAGGATCCCAGCTGCGAGCTGTGCGGCTTCTACTTTGAGAACCGAAAAGCTCTGGCCAGCCACGCGCGAGCTCACCTGAGGCAGTTTGGTGTGACTGAGTGGTGTGTAAATGGATCCCCCATCGAGACGCTTAGCGCCTGGATGCGCAGCAGGCCGCAGAAGGTCTTGGAGATGCATCGGAGCTACATGCAGGGCAACCGCTCAACCCTGAAGAAGAAGAGCACTTCTCCTCTCACTGCATCAGCGGATTCTGACCATATCCTCCCCATCTCATCACAGaaggcctcctcttcctcctcctcctcttcctcctcctcctcctcccagtgGTCTTCTTCTTTGGCTCTGAGCCTGGTGCGGCCGCTGAGCTGCGAGGTCAGCCAGGGCTCGTCCAGGACTGCTGACGGTGAATCCGGTACCAGCCAGTTCAGGCACGGCAGCAGTAGTCCCAGCCCCTCGCGGCTCGCCGCTGGCCTCCCGCTCCAAGCACAGGTGGCTCGCAGCGAGCTGAACGTCCGCCTACCCAGAGGTTTTGAGCGTCGGCCCTTGAAGCACCCTTCTTGCCCAGATGGGACAGAGAGCCCTCCTAAGCCCCCCCGCACAGGCACTGTCCCCGCCCTGGTGCCCAAACCACCCTCCTACCCGCTGGTCAAACTGGTGGGCAAGTTCTACACCCTCAAGTGCCGGTTCTGCGAGGTGGAGTTTCACGGCCCGCTGTCGGTGCAGGAGGACTGGATCAGACACCTCCAGCAGCACATCCTCAAGATGAACTACAACAGGCCCGCTGCGCCCAAAGCCGCCTCCGCTGAACCCCCTTCCCCAGCCTCTACCCCAGCCTCCACTTCCACCTCCACCCTGGGCCGCGCCAACGCTCCCAACAGCCGCTCCCATACACCTCCGGTGGCCGAGCGCGCTCCGCCCGTCACTGCCACAGAGATTGCAAAGGTCTCAGAGGAGCAGCCCACCTTATCTCCAACTTCCATTCCCCTCCCTGCCCAGACAGCGTGAGCTCAGATTCCTCACTGTCATTTAACCCCCTTTTTTAGTTTAATTCCTGCCTTTTTTATTATACCTTTTCGTCCGTTTTCTCGTTCCTTTGGCCTTCACAAAGTGTTGAGGAGGAGCGTTTTCCCTCCAAAGAGCCCTCTGAGTCCCACGCACCTTTTCGAAGCAGCTTTCTACACTGTTACTAAGACCCGTTTGCCATGGGAAAGAAGCTCTCAGGGCTTAGCCACGCACCACAGATGGGTCATGAGGTTACGAGGAGAGACGAACCAATGATTTTTGTGTTTGCCTTGTTCATATTGAATGTCCAGGTGTTGACGTGGACCGTTGCTGTACCTCTCCTCCCATTCGCTGGGGGATTTAGGGTTAATGTAGCCCTTTTTATCAAACTTCAACCACCCCTGTCTACCACATTTCTGCCCCCCTTTTCCCCTTTACTATCTTACTAGCGTTACTTAGACCAGTCAGACTGAGATTGAATGACTTTTATAATCATGTGAGTCTCGTGGTTGAGACTTTCAAACACTTAGTGTTAAAACAGGCACTTTTAACGTTGACTTTGTCACTTAGCACTTACTGAAAGGCTCATTTTAAATGGGCGAAATCTCGACAATGACTACAGGTCCTTGCACACTGAGTCTGAAATCTTCGTATGCCTTTTTTTCGTCACGCACAGAAACCTTGCACACTGACTCCGATGCGTATTAATTAATACTCTGCGAAATCTTCcgtaaaataatacaaaatttaGTTTTTCAAGCTGTGAGGATGATTATGTTGTCCTATTTCTtcttaaaaagagaaagaaatgggAAATATTGGCTCCATCCAGTCCTGAGATTGCGCTGCGGGATTATCCCCATCCTTTCAAAGTTTATTTTAGGATATCTTGATAACACCCTTGAACTCATTGATATTTGAACTTGGACTTGGCCATTGGTCTCGCCAAATATCCTAGTTGGTCTCGACGGAGTCCAGCAATAtagcgttattatggaacccactgcagttctaggcaagacccgtACTTTAACAGCATTCGCACGCTACGATTGGCTAGGCGGCCAAGCTTGCATGAGGTAATGGACCTTGATTTGTTCAGGtgctatcccctgaccaatcggctatcctgaCCTTAACTACTCGAGGTCAGTGCCTAATCGGGCTGCTTCATAGTGCGGGTCGTGCCTAGAACTGCAGTGGGATTCATAAAACACAGCaatatatgcttttttttctaaagtaacttcctTCTTTGAAACAAAACCATTTATGGAGCGCACTTGTAAAGAAAACAGGcattggtttaatttaaaattcacCTAGAACGGGTCTTTAGCAGGagtcctttttttctctcattgGGATGTCACGAGAACCGATACTTCGGTACCAACTCGGTACCAATACTAGATTTTTGGTATCGTGACATCCCtagtctctcatttggactcggtcttgacttgatctcgactagtcctggtcttggacttgtcttggactctaCAAAGGTGTTCTTGACTAGAGCACTGCTTGATAATCGTGCTTTGTGCTTGATTTTGAAGTGTCAAAACACCTCAAAATGCTTGCGACAGATAcgaaaaaacagagaaaattgAATCCCAAATGATCCAAAATGTTTCTATGACTGATGAAAGTTTCGGGGGGCACCTGATGGACACAACTGTCACGGCATTGCCACAGCCCTGGGAGAACTTGATGCTATCATCATTACTCACCTAGGGCTTCCAGGGacattaattacattaatttaTCTAACCCTAGCCCAGATTTTCCGCTGGGCACGTGTGTGCTGCGTTCCGGCTGCATCGTGGTTTTGTTCCACgtgccataccacaccgggagcttCAGATGCGGAACGTTTTTAGCTAATATATATGCCTTCTAGCCTAGAAATGTAGACACACCCTAgaggcagcaaatgtaatttgcagccagggtcgtctagcaacggcttggcttgcaagctggaaaaactctggtcaggccaatcacatcgtgtatagagtcagtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204729 lncRNA downstream 1884 2352058 ~ 2353558 (-) True G151134
TU204734 lncRNA downstream 4426 2350000 ~ 2351016 (-) True G151139
TU204566 lncRNA downstream 48189 2306901 ~ 2307253 (-) True G151053
TU204554 lncRNA downstream 68582 2286435 ~ 2286860 (-) True G151047
TU204551 lncRNA downstream 85250 2269970 ~ 2270192 (-) True G151044
TU204757 lncRNA upstream 5447 2438667 ~ 2643750 (-) False G151146
TU204756 lncRNA upstream 7778 2440998 ~ 2598188 (-) False G151146
TU204774 lncRNA upstream 8004 2441224 ~ 2500990 (-) True G151147
TU204779 lncRNA upstream 39190 2472410 ~ 2487633 (-) True G151149
TU204811 lncRNA upstream 41939 2475159 ~ 2490191 (-) True G151169
XM_039823830.1 mRNA downstream 130474 2214594 ~ 2224968 (-) True LOC120573916
XM_039823890.1 mRNA downstream 146185 2164720 ~ 2209257 (-) False ilf3b
XM_039823889.1 mRNA downstream 146185 2164720 ~ 2209257 (-) True ilf3b
XM_039823892.1 mRNA downstream 146185 2171241 ~ 2209257 (-) False ilf3b
XM_039824602.1 mRNA downstream 193718 2132732 ~ 2161724 (-) True farsa
XM_039823842.1 mRNA upstream 4882 2438102 ~ 2450469 (-) True pglyrp6
XM_039824144.1 mRNA upstream 304715 2737935 ~ 2750253 (-) True LOC120574080
XM_039824003.1 mRNA upstream 368162 2801382 ~ 2820321 (-) True si:ch211-106h11.3
XM_039824004.1 mRNA upstream 407213 2840433 ~ 2842813 (-) True LOC120574018
XM_039824168.1 mRNA upstream 566430 2999650 ~ 3003392 (-) True trir
TU204533 other downstream 193720 2155596 ~ 2161722 (-) False farsa
XR_005641788.1 other downstream 501341 1853642 ~ 1854101 (-) False LOC120573864
TU204241 other downstream 533596 1818724 ~ 1821846 (-) False LOC120573867
TU204260 other downstream 615961 1724122 ~ 1739481 (-) False G150856
TU204258 other downstream 656361 1658877 ~ 1699081 (-) False LOC120574289
TU204768 other upstream 109209 2542429 ~ 2598982 (-) False G151146
TU204751 other upstream 163582 2596802 ~ 2598982 (-) True G151146
TU204905 other upstream 440698 2873918 ~ 2896343 (-) True G151216
TU204921 other upstream 478106 2911326 ~ 2915367 (-) True G151227
TU205089 other upstream 878507 3311727 ~ 3316915 (-) True G151344

Expression Profile