RNA id: XM_039825497.1


Basic Information

Item Value
RNA id XM_039825497.1
length 2534
RNA type mRNA
GC content 0.52
exon number 24
gene id clcn7
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6814676 ~ 6831673 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACCCTTACAAAGCGTCACGAGTCACAGGGATGATCATGGGGAGTTGAGAAAGAATAACATTAGCTAGTAAGCCAGCGACAACTGCAATTAATGAGATAATCAAGCGGCAGTTAGGGCAGCGAGCTACAGGAGGCCACCATGGCAAATATCGCAAAGAAAGTGTCGTGGTCCAGCCGGGCCGAGGAGTCCGGGGCAGCCGGGGAGAGGACGCCGCTGTTCAACGGCTCCGAGCAGCCCAGACTCTCCAGACAGGACTCTCTGAGGGGGCGACCTAAAGAGATCCCTCATAATGAGAAGCTGCTGTCACTTAAATATGAGAGTCTGGACTATGATAACATTGAGAATCAGCTATTtttggaggaggagaggaggatgagTTACATGGGTTTCCGCTGTCTGGAGATCAGCCGCTGGGTGGTCTGTGGTCTAATCGGCTTCCTGACCGGCCTCATCGCCTGTTTTATAGACATCGCGGTGGAGGAACTGGCTGGGATCAAATACAGAGTGGTCAAACAGAACATAGAGAAGTTTACCGAGGTGGGCGGCCTGTCGATCTCCCTCATCCTCTGGGCCGTCCTCAACGCCTCCATTGTCATGTTGGGGGCCATCATAGTCGCATTTTTCGAGCCCATAGCAGCAGGAAGTGGTATTCCTCAAATAAAATGTTACCTAAATGGAGTCAAGATTCCCAGGGTGGTACGACTCAAGACACTGGTGGTGAAAGTGTGCGGTGTTATCTGTTCAGTGGTCGGCGGTCTCGCTGTAggaaagGAAGGGCCCATGATTCACTCTGGTGCTGTTGTAGCTGCAGGCGTCTCCCAGGGCAGGAGCACCTCCTTAAAGAGAGactttaagATCTTTGAATACTTCCGGAGAGACACAGAAAAAAGGGACTTTGtgtctgctggagctgctgctggagTTTCAGCTGCTTTTGGAGCACCAGTCGGTGGCGTTCTGTTCGCTCTAGAGGAGGGAGCCTCTTTCTGGAACCAGATGTTGACGTGGAGGATATTTTTTGCCTCCATGATCTCTACCTTCACCCTGAACTTCTTCCTCAGTATCTATCATAAAAATCCAGGAGACCTTTCCAACCCGGGTCTCATCAACTTTGGGCGCTTTGAGAGTGATAGTGGGGCCTATAACCTCTATGAGATTCCCTTGTTCATCGCTATGGGAGCTATAGGTGGATTGCTGGGAGCTCTGTTCAATGTGCTCAACTACTGGCTGACCATCTTCAGGATCAGATATGTTCATCGCCCTTGTTTACAAGTGATGGAGGCCATGTTGGTTGCTGCAGTGACCGCGACAGTGTCGTTCACCATGATCTACTTCTCCAATGACTGTCAGCCTCTGGGGCCAGAGCACAATGAGGAGTACCCcctgcagttgttCTGTGCAGATGGGGAGTATAACTCCATGGCAACGGCCTTCTTCAACACTCCTGAGAGAAGTGTTCGTAGTCTCTTCCACAACCAGCCAGGAACCTACAATCCCTTGACCCTGGGTTTGTTCACCCTGACTTATTTCTTCCTGGCGTGCTGGACCTATGGCCTGGCGGTGTCTGCTGGAGTCTTCATCCCATCTCTGCTCATAGGAGCAGCCTGGGGAAGATTGTTTGGAATACTGCTGGCCTCCATCACCTCCAATGgctcgATCTGGGCTGACCCTGGTAAATATGCCCTGATTGGAGCTGCAGCTCAGTTAGGTGGCATTGTGCGGATGACCCTCAGTTTGACTGTCATCATGGTGGAGGCTACAGGAAACGTCACATATGGTCTTCCCATCATGCTCGTCCTCATGACTGCCAAGATAGTAGGAGACTATTTTGTAGAGGGTCTGTATGATATCCACATCAAGCTGCAGAGCGTTCCCTTCCTGCACTTAGAGGCTCCCGCCACCTCCCACTGGTTGACCGCCAGaGAGGTGATGGGTTCCCCGGTCACCTGTCTCAACAGGATAGAGAAGGTGGGAACCATCGTGGACATCCTTAGCAACACGTCTACCAATCACAATGGCTTCCCAGTCGTCGTGCAGGTTACTGGTAGTGACGAGCCAGCGAAGCTCTGCGGCCTCATCCTCCGCTCTCAGCTCATTGTTCTTCTCAAGCACAAGGTGTTTGTGGAGTTGGCCCGGTCCCGGCTGACCCAGAGGAAGCTCCAGCTGAAGGACTTCAGGGACGCCTATCCCCGCTTCCCCCCTATCCAGAGCATCCACGTCTCCCAGGACGAGAGGGAGTGTATGATGGACCTCACTGAGTTCATGAACGCAACACCTTACACTGTACCACAGGAAACGTCTCTGCCTCGTGTGTTTAAGCTGTTCAGGGCGCTGGGACTCAGACACCTGGTGGTAGTGGATGACGAGAACAGGGTGGTTGGACTGGTGACAAGGAAAGACTTGGCCAGATATCACCTGGGAAAACACGGACTGGAGGAGCTTCAGGTGGCGCagacataatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206823 lncRNA downstream 40963 6772880 ~ 6773713 (-) False arhgdig
TU206694 lncRNA downstream 57591 6756791 ~ 6757085 (-) True G152577
XR_005641813.1 lncRNA downstream 103477 6709402 ~ 6711199 (-) True LOC120574035
TU206674 lncRNA downstream 215800 6597999 ~ 6598876 (-) True G152560
TU206672 lncRNA downstream 216833 6597354 ~ 6597843 (-) True G152559
TU206870 lncRNA upstream 181574 7013247 ~ 7013685 (-) True G152720
TU206859 lncRNA upstream 189796 7021469 ~ 7038559 (-) True G152712
TU206881 lncRNA upstream 369014 7200687 ~ 7200912 (-) True G152730
TU206880 lncRNA upstream 372641 7204314 ~ 7206094 (-) True G152729
TU206894 lncRNA upstream 499137 7330810 ~ 7356838 (-) True G152738
XM_039823650.1 mRNA downstream 13140 6772880 ~ 6801536 (-) True arhgdig
XM_039825812.1 mRNA downstream 48361 6758260 ~ 6766315 (-) False rpusd1
XM_039825811.1 mRNA downstream 48370 6758260 ~ 6766306 (-) True rpusd1
XM_039826238.1 mRNA downstream 58396 6750266 ~ 6756280 (-) True slc25a17
XM_039825287.1 mRNA downstream 66267 6738111 ~ 6748409 (-) True znf598
XM_039823947.1 mRNA upstream 1688 6833361 ~ 6836823 (-) True LOC120573992
XM_039823948.1 mRNA upstream 1814 6833487 ~ 6836823 (-) False LOC120573992
XM_039824310.1 mRNA upstream 29372 6861045 ~ 6891170 (-) True usp7
XM_039824311.1 mRNA upstream 31289 6862962 ~ 6891170 (-) False usp7
XM_039824313.1 mRNA upstream 31289 6862962 ~ 6889738 (-) False usp7
TU206683 other downstream 94033 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 586562 6182408 ~ 6228114 (-) True G152441
TU206279 other downstream 1201008 5574680 ~ 5613668 (-) False atp5mf
XR_005641918.1 other upstream 1250465 8082138 ~ 8100398 (-) False LOC120574885
TU207167 other upstream 1609506 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 1899724 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 1980669 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 2022087 8853760 ~ 8856957 (-) True tufm

Expression Profile