RNA id: TCONS_00008623


Basic Information

Item Value
RNA id TCONS_00008623
length 340
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id XLOC_003506
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27729240 ~ 27731175 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aacGATACCTTCAAGGATGCTAAAGGATGCTCAGGACCAAGTAAACTCCAGTGAAAGGCAGCCAAGTCTTCATCAGGCAGTATGTGCTACCTAAAAGTGAAGCAAAAATGACGAAACGATTTGGATTGAGATTAAGCTGCTTGGCAACTTCGTGCATCAGGTATTGGCTGGTGGTGAGGCTTTTGCCGTTGCGGCTGAGTTTGAGGGCATGGGCACTGAAGTAATATGGGATGTTGCACAGGGCGTAATCCGAATCATAGGCAACCAGACCATGGAAGCCGTTCTCTCGAAATAAGGCAATCACTTCCTGGTGATGATCCTCGATGGTCTGGACAACCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006867 lncRNA upstream 79581 27625076 ~ 27649659 (+) False XLOC_003505
TCONS_00008403 lncRNA upstream 79658 27625084 ~ 27649582 (+) False XLOC_003505
TCONS_00008404 lncRNA upstream 81800 27625172 ~ 27647440 (+) False XLOC_003505
TCONS_00008622 lncRNA upstream 81800 27637973 ~ 27647440 (+) True XLOC_003505
TCONS_00008621 lncRNA upstream 202679 27513860 ~ 27526561 (+) False XLOC_003502
TCONS_00006868 lncRNA downstream 7314 27738489 ~ 27744282 (+) True XLOC_003507
TCONS_00008624 lncRNA downstream 687599 28418774 ~ 28424314 (+) True XLOC_003510
TCONS_00006877 lncRNA downstream 711198 28442373 ~ 28446862 (+) False XLOC_003511
TCONS_00006878 lncRNA downstream 711198 28442373 ~ 28447433 (+) False XLOC_003511
TCONS_00008625 lncRNA downstream 715138 28446313 ~ 28447071 (+) True XLOC_003511
TCONS_00006866 mRNA upstream 183521 27543093 ~ 27545719 (+) True XLOC_003504
TCONS_00006858 mRNA upstream 345508 27274355 ~ 27383732 (+) False XLOC_003500
TCONS_00006869 mRNA downstream 237659 27968834 ~ 27997774 (+) False XLOC_003508
TCONS_00006870 mRNA downstream 237870 27969045 ~ 28010171 (+) False XLOC_003508
TCONS_00006871 mRNA downstream 241880 27973055 ~ 27989394 (+) True XLOC_003508
TCONS_00006872 mRNA downstream 376457 28107632 ~ 28126139 (+) False XLOC_003509
TCONS_00006873 mRNA downstream 378228 28109403 ~ 28122454 (+) True XLOC_003509
TCONS_00006865 other upstream 208667 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006853 other upstream 1114653 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006838 other upstream 1651179 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006817 other upstream 2246270 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006814 other upstream 2250822 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006890 other downstream 1620926 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006893 other downstream 1835572 29566747 ~ 29571528 (+) True XLOC_003523
TCONS_00006949 other downstream 3240859 30972034 ~ 30997832 (+) False XLOC_003549
TCONS_00006950 other downstream 3243596 30974771 ~ 30974892 (+) True XLOC_003550
TCONS_00006952 other downstream 3284344 31015519 ~ 31024572 (+) True XLOC_003549

Expression Profile

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