RNA id: XM_039825593.1


Basic Information

Item Value
RNA id XM_039825593.1
length 1642
RNA type mRNA
GC content 0.43
exon number 6
gene id antkmt
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8998880 ~ 9003151 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggaaaGCATTACAGGGATCAGCCATCATTACACTAGTGGCCATCAGTGGCTCCGGCAGGATTCTATTTCTTACTACGCAGAAGAATCGCCTGCACTCTAGTAGGAATGGATGACAATGGACCAGATAAGGTCTTTGCTGAGCTCAAGACCAGGGACATCGGCGGATGGGGTGTTGCTCAGATAGCTGCTGGCAGTGGGCTTGCTGTATATGCTATGTGGGTGGGAATCCTCCAGCCAGGCTTCCGAAAAGTCCCCTTGAGGCTACAGgtCCCATACATTCCTGCCAGCAAAGCTCAAGTAGACCATGTAATGACATTGCTGAGAGGTCGAAAGGGAGGCCTTGTAGATTTGGGATCTGGTGATGGTCGCATTGTCTTGGAAGCCCATCGGCAGGGTTTCACTCCTGCTGTTGGTTATGAGCTCAACCCTTGGCTTGTTCTCATGTCCCGCTTTCATGCATGGAGAGCAGGCCATCATGAAAAAGTGTCGTACAGACGTGAAGATCTCTGGAAGGTCGACTTGACAGAATGCAAGAATGTCACGGTGTTTTTGGCTCCAAGCGTGCTTTCATTATTACAGCAGAAGTTGGAGGCTGAGCTTCCTGATGATGCCTTAATGGTAGCTGGTCGTTTTCCCTTCCCTGACTGGACACCCTGCAGGATTGAGGGACATGGTGTGGACAGAGCCTGGGCATATAGCATGCAAGCACAAAGACGGAACACCTTCAGGAAAAATGACAGACAGCTCACAGATATCGACCTCAACAAGGAACTAACCAAGGAGAAAGGATCCACTTAAAGCTACATGGGTGATTTGTTTGTACATTTGATTTGTTATTAGCAAAGTTTAAACCAGAAATTCCTGAGCAAGGGTTTCTGTTATATTAATAAATGGAAAACCATACCTTTGCCTTAAGAAAACTGTAGATATTTTAGGGATTACCTGCCTGAGGGGGGagtaaactgcattttgttctgCTGTGTTCAGTATATTCTAGAGATTCTTTTATTCCGATTTGAATACCTGACCTTGCGTATCGGCTAATACTGAGCAAAGATCCGATACCATTGCGTATGGATGTGATATATTATTGCTATCATTGTTGTATGGTCTGGCTCAGGTTCAACGGCCTTTATACAAGTACATAAAGAAAATtaattctgtttctgtttttatcaaGTTTGAAAGTTGGTCATACAgtaaaaagaacataaataaactattttAAAGTAGATGGTGAAGCTAGTTTTCTACAGGTATGAtgagtaaaaatgtaaatgctttGTGTGTGATGGTCAAAGGCCCGTTAGTACTGTGGAAATGTCTTTGTCTCAGCAAGTTTGGAATGTGGCTATTCAGGCTCTGACGTCAAAAGAGGTTATAGTGTGTTTTCCCCCAATCTCCCAAACAGATTGTAACACTTGTTTTATGGGGTCCATAGTGTATAAAGGGTACATGCAGTATTActgcagcagtaacaacagTATCCCTGTACGTACATCCCGTGACGGTAAAACATACCCTctgtatacatactgtatgtaggtGCATATTCTGTTTTGGGCTGTTGCATTTTGTCATGATTTTTTAGATTTTACCTTCATGTGATAATTTCTGTTATAAAAGTAATTGCTCTAATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207565 lncRNA downstream 95057 8895786 ~ 8903823 (-) False zgc:55558
TU207566 lncRNA downstream 95057 8895786 ~ 8903823 (-) False zgc:55558
TU207568 lncRNA downstream 95057 8895786 ~ 8903823 (-) False zgc:55558
TU207562 lncRNA downstream 100251 8895786 ~ 8898629 (-) False zgc:55558
TU207439 lncRNA downstream 278980 8718193 ~ 8719900 (-) False G153137
TU207647 lncRNA upstream 58145 9061296 ~ 9111224 (-) True G153274
TU207650 lncRNA upstream 58145 9061296 ~ 9101630 (-) False G153274
TU207653 lncRNA upstream 61845 9064996 ~ 9085687 (-) True G153275
TU207884 lncRNA upstream 184099 9187250 ~ 9194175 (-) False LOC120574599
TU207886 lncRNA upstream 184099 9187250 ~ 9204006 (-) False LOC120574599
XM_039824494.1 mRNA downstream 510 8973823 ~ 8998370 (-) True xpo6
XM_039824495.1 mRNA downstream 25232 8969882 ~ 8973648 (-) True nme4
XM_039824496.1 mRNA downstream 25625 8971080 ~ 8973255 (-) False nme4
XM_039824719.1 mRNA downstream 43594 8943059 ~ 8955286 (-) True slc6a16a
XM_039824720.1 mRNA downstream 56563 8924601 ~ 8942317 (-) True slc17a7a
XM_039825591.1 mRNA upstream 114 9003265 ~ 9010931 (-) False hirip3
XM_039825590.1 mRNA upstream 114 9003265 ~ 9010931 (-) True hirip3
XM_039825761.1 mRNA upstream 8072 9011223 ~ 9018740 (-) True kctd13
XM_039825617.1 mRNA upstream 16935 9020086 ~ 9036828 (-) False sez6l2
XM_039825615.1 mRNA upstream 16935 9020086 ~ 9036585 (-) True sez6l2
TU207564 other downstream 91218 8904081 ~ 8907662 (-) False zgc:55558
TU207570 other downstream 94540 8895786 ~ 8904340 (-) False zgc:55558
TU207546 other downstream 141309 8853760 ~ 8857571 (-) False tufm
TU207545 other downstream 141923 8853760 ~ 8856957 (-) True tufm
unassigned_transcript_737 other upstream 186233 9189384 ~ 9190066 (-) True LOC120574343
unassigned_transcript_738 other upstream 188835 9191986 ~ 9192402 (-) True LOC120574654
unassigned_transcript_739 other upstream 190467 9193618 ~ 9194157 (-) True LOC120574599
unassigned_transcript_740 other upstream 217390 9220541 ~ 9221072 (-) True LOC120574348
TU207903 other upstream 217466 9220617 ~ 9221090 (-) False LOC120574348

Expression Profile