RNA id: XM_039825597.1


Basic Information

Item Value
RNA id XM_039825597.1
length 4193
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC120575024
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 19578284 ~ 19603997 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTTCGCTTTGGATTTACACCTAGCCGCATCTTTCAGAGCACAAGATTTGTTTGGATCTGACCTAATACCAAGATGATATTTCCACATCGAGGTTTTGGTGtttgaaccttttttttaaactgtaggACGGAATTGTGCCACATTGGAGTTGTCAGATACGCTATAAGGGACGATACATTTACCCATATACGTGAGCCTCAATCCTAAATGCTTGTCCTTGCATGGCATGAGCGAAATATAAACAGCtggcgtgtgtgtatatgaacTGTTTAATCAACCTGCAGTTGGAGAGCAAATGACCATAAGGCGTCCACCTCGCAGCGCGTCCAAATCACTGTGATGTGGATCTGTTTCACTTTGCCAAGCTGTGTATGGCTAAAGCCGGAGATTTCCGACCGACTGCACACAGTTTGAGGAGTtacaagtttttttgtttggtttgtgtCTTGAACGACTTTTTCCATTCCGGTGTCGATGATGACTGAGAACAATGAGATGGAGAGCAACTCTCAGCTCCAGCGCTGTCCAAGCACCATGTCCATCCAGCCGATGTCATCCAAGctccAGAGACTAAAACGCTCGCTGTCCTTCAAGACCCTCATGCGCAGCAAAAGTGTGGATAACTTCTTCCAAAGGTCCTACAGCGATGCTCGCCTGCCTGAAGATTTCATCACTGACCTGCCGCCTCCTTCTCCTCCACTGCTTCCTGGCTCTCCTCTCGTCGGCGACCGCTCACCGTCCATTTCACCATCTCTCAGCCCCAACCCCTCCATCTCCtcccactccccctctctcagCCTTTCCCCATCTTTGCCCATCAAGCCGCCCCGACCTCAGATTACCCACTCTTTCCAGGACCATGTCTTTCGCAAGCCCACCAACTGCCAGCACTGCAAGCACATGATAGTGGGAAACTCCAAACAGGCCCTGCGGTGTAAAACATGTAAGATGGCTGCTCACCTGTGGTGCACCTCAGAACTATCGCAGCAGCTGTGTCAAGGGAAGTCTGGAGCTTTCAAGCGAAACTTCAGCTCGCCGATGCTCGTCAATGACCAATTGTCTGTCGTCAAGGAAGTTAAACCAAGCCAAGaGGCTGCGCGGATGCGTGTAGACCCTGTGTATGCAGCCTTGCGCTACGGGACGTCCTTGGCACAGATGAGCCGCTCCAGTTTTGGCAGTTTGTCAGAGTCCCCAACACGCAGCCTGGGGGAGGGAGGTGAGGAGATGCAgcagagacagtgcagcatggagGAAGACATAACTCAGGAGACAGGGGACACCCATGTCCCCGACATCGAGATCGAGGAGGAAGGTGAGAGCGGCAGCCAGGCTCAGACTTCAGCAGAAGATGAGACTCCAGCAGAAGATGAGACTCCTGCAGAGGAGAGCAGTGTGATGGTGCCCAAGCGCATTGAAGTTCACTCCATCCACACCTATGTAGCGCTCTACAAGTTTCTGCCTCAGGAACAGAATGACCTGGAACTTCATCCTGGTGATCGTGTGCAGGTCACTGACGACTCTAACGAAGAGTGGTGGAAGGGCAAGAGCGGAGACAAAGTTGGCTTCTTCCCTTCCAACTTTGTGCAGAGGGTCCGGCCAGGAGAGAGAGTGTGGCGGGTCGTCCAGGGCCTTCCTGGCAACCGAGAGAGAGGACACATGGCCGTGAAGGAATCCCAGATCTGTGTGGGGAAGCGAGAAGACGGCGAGGTGTTTCTGAGGCTGAGCAGCGGGAAGAAGAGAGGGCTGGTCCCTGCTGACTCCATAGAGGAGATCTGAGCCTCTGTGCTCAAATCACCATCCTTCCACTTCTACTTCCCCCTGGGAGGCACCCGTCTTCATATCCCCTCCTCCACCCTGCGCTCGTCAAAATGACAGCCGCAGCCTTTCCAACCAGTCCTGACTAACTTTAACCAAACACACTTCTGCAAAGAGCTGGAACCACAGCCCCCTTGAACATGTGGTTTCCCGTTGATTTCATTTACTTTCTTTAATAGAGTGTACAGTCATGCAGTAACCCTGCTCTTACAAAGGAACTGTTTTTCAGCAGTCTAGTTTTATCTTTCCAATACAAACATCAGTGTTTAGTTAGAAAAGTCAAAAATGCATAAGtcaaaaatgctttaaatatgCTTGCCAGATGCCAGTTCACATCTCTTTTTCATCCATCAAAAAGATGTCTACCAACGTGGGAGGAGGCTGAGTCCTGTCATGGGAACATGATGCCTCTGTCAGTGTCCTTTTCTTTTTACTGCCCACTCCGCATGTCTCATCCCTATCTGCTCATGTCAGGGTCTCTGGCCTGAGGACTGATATCAGCTAATGGTAGCTACACAACATGAGGCACGTGCCAAGGACAACGACTGCCAGCCAGAGAACTCTGCTGCCAtgcagacagagaagagaaTCAGATGAAAGGAGTAGACCCGATCCAAAAAACCTCAGCAGTGTCAGACTGAGTTTTGACTGCATGCAGTCAACTTGTGAGTGCAGAAATCAGAAGATTTTCAAAGGAAATGTGAAGCCTCTGAGGATATCTACACaggaaacttaaaaaaacatttcccctgactttttcagtaaaaataacaatgaaaatatGGAACAAAAATGCGTCAGCTTTATTTCTGGTAAGAGAGCATAAATCAGCCGGTGGACCCCATGCTCCACAGAAAGGTCAACTCAACAAATTTTGCAAAACAaactttccctttttttcttgtttttatctATCTACAAGACAGGAACTTAAACCTGAAGGAACTGctggaaaaaaagtatttttagtTAATGGCATATCCATACAGGAATACATTTTGGTGCAAAGCATCTTGTTGATAACTCAGCGGTGATTGTCTAGGGTCTAAATCTGTTGTCTTACTGTTTTAAGCAAAGGTGATGCAGGGGAAATCAAAAGGAAGGGAGGTAAAACTTGCGAGTCTCTCTAGACAAAACAGGGAGGGTGGTCCTCCCTCGTATGGCTGGTTGTTGTGAGCACTGAGCAAGACCTTCCAAGTGTAGCAGTGGCAGTTTCTGTTCTCCTGTTTTCACATATAGGAGATGGACGGGCATTAAAGGGTTGTTTTTTCTGTCTGCAGAGACCCGCTGAAGAGCTGCAGTGGGTGTTGCAAATGTTGCACAGCATTATTACATGACTTCACTAGAGCTGGAACAGTGGGAAACAAACGGCGGCCAGTCTgccagaaaaacaacacaatggGGATCTTTCTGACCATGACAAGGAGTCTAAGTTTCACTGACAGCTTGGAGGAGGATGCAGGGaaacagagggaggaggaggtgtagTGAGAGGAATGACATCAGTGTTGAACCATTATGAGTCAGTCTGTGCATGCAGGTAGTGTTGTACACATGGGTACCAGTCATCATTGATCAAATGTCAGCCTGTCATCTCCATCTTCTGCTCCCCGTTTGGCATCTCTCGTCCTCTCTTTCTTTACTGGTCAGTTATGACATAAAGTgaaggcattttttttcttcttgtacTGTACATATTGATGTTTTAGACACCTTTTTCCAGAGAGAGGACACTCCACTTGTGTCACGAACATAAAGAATGCAACAGTAGAATGATGGCACTGCAAATGATGAAATAATTTAACTAAATAATTTAACTCGTATGTCTTTCAGACCACAGAGATTACGCTAATGTGATCCTTCTTTAGTCTACATTTTAATATATGTGAAAGCGTTTAGAGACTGTGAGAAATAAGCTTCTCTTCTTGTAATGATGAGAATAGCACTTTATTTTGTGTCATCTTAATAAGTTGTCCTATTTGTTGAGGTATCTCTATAGTGCTATAGTGATAGCTTTCATATTTAACAATACTTTACCTGCAACTTCACTTCCCTATGGAGCTCTTTGGTCAAAGGGCTGATAGCTTGTCTATGTGCGTCagatttataatatataatatcagAGATGGAAAAAAACTGAGAATTACACAGCAGCATAAACAATATGACCATCCTGGAGAAAAATGGCATCAGAGCAGAACTGGATTTATGATTTTTACCCATGTAAACACTTTGTTATCTTACATTGTGCCTAGTTTCTGTAGCATCACATGTTCACACCTTTTAGAATTCAAAATGTTAAGTATGTGTTTGGATGTATCCTGAGTCCGGAGTCATTGGTTGGCCACATACCTTAATAAAAGATATTTACAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212067 lncRNA downstream 9784 19568276 ~ 19568500 (-) True G156466
TU212024 lncRNA downstream 54293 19432371 ~ 19523991 (-) True G156430
TU212042 lncRNA downstream 99359 19478509 ~ 19478925 (-) True G156446
TU212011 lncRNA downstream 154726 19410192 ~ 19423558 (-) True G156418
TU212005 lncRNA downstream 240662 19337289 ~ 19337622 (-) True G156414
TU212131 lncRNA upstream 62933 19666930 ~ 19727372 (-) True G156504
TU212139 lncRNA upstream 103033 19707030 ~ 19709308 (-) True G156510
TU212200 lncRNA upstream 328665 19932662 ~ 19936556 (-) False G156562
TU212204 lncRNA upstream 332280 19936277 ~ 19941892 (-) True G156562
TU212210 lncRNA upstream 346394 19950391 ~ 19952982 (-) True G156567
XM_039825454.1 mRNA downstream 20876 19536871 ~ 19557408 (-) True LOC120574940
XM_039826074.1 mRNA downstream 50393 19518608 ~ 19527891 (-) True fkbp10a
XM_039824464.1 mRNA downstream 138619 19434615 ~ 19439665 (-) True nkiras2
XM_039823784.1 mRNA upstream 3889 19607886 ~ 19623751 (-) True fbxl20
XM_039823647.1 mRNA upstream 64450 19668447 ~ 19673683 (-) False LOC120573806
XM_039823648.1 mRNA upstream 64450 19668447 ~ 19672942 (-) False LOC120573806
XM_039823649.1 mRNA upstream 64450 19668447 ~ 19672430 (-) True LOC120573806
XM_039824015.1 mRNA upstream 127370 19731367 ~ 19743502 (-) True LOC120574025
TU211982 other downstream 327028 19249726 ~ 19251256 (-) True G156396
TU211888 other downstream 457352 19108899 ~ 19120932 (-) True G156321
XR_005642008.1 other downstream 1224119 18354082 ~ 18354165 (-) True LOC120575517
XR_005642009.1 other downstream 1224838 18353363 ~ 18353446 (-) True LOC120575518
XR_005642010.1 other downstream 1225440 18352761 ~ 18352844 (-) True LOC120575519
TU212205 other upstream 341591 19945588 ~ 19947890 (-) False si:busm1-163l24.3
TU212206 other upstream 341591 19945588 ~ 19947890 (-) False si:busm1-163l24.3
unassigned_transcript_859 other upstream 416220 20020217 ~ 20020288 (-) True trnac-gca_26
unassigned_transcript_860 other upstream 567290 20171287 ~ 20171358 (-) True trnac-gca_27
TU212545 other upstream 1465029 21069026 ~ 21071488 (-) False atxn7l3a

Expression Profile