RNA id: XM_039825668.1


Basic Information

Item Value
RNA id XM_039825668.1
length 3278
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC120575070
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14936968 ~ 14950077 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCGTTGGAACCTTCAGCTGTCAAGACTTTGGCCACCCTAAAAGTGCAGGTTTTGTTAGCAAACTAACTCGAACTGTACATCCCGAGCCGACGTTATTTAAAGTTGTGCATTCATCTGCTAATCGATCTTTGAACGCGCAAGCTGGTGattgaagcactaaaattgcACGAAGACGAACCGTTTAGTTTTAATCGCTGCTAGTTTTTGCACAAGCCAGCGATCCTGAGCGGGTGTAAGGCTAGatgcagggagggagggagtaaaaaaaggcaaaagtcTTTGTGCTTCCCTTCCCCCTCATCAAAGCAAAGGGGAAATGTCTCTGTCTAAAGGAGggaagaagaagaacccTGGGCTGAAGCTGGCCAAAGAAGTGTTTGCACAGCccacaccagcagcagcagcGCCTCCTCGAGATCTTGACTCGAAAGCTTACGTCACAATTGGAGATCAGAACTTTGTGGTGAAGGCCGATGACTTGGAGCAGATTGAAGAGCTGGGCAGGGGAGCGTACGGGGTGGTGGACAAGATGAAACATGTGCCCAGTGGTGTAATCATGGCTGTCAAGAGGATTCGTGCCACTGTCAACACTCTGGAGCAGAAGAGGCTTCTGATGGACTTGGACATTTCCATGAGGACAGTGGACTGCTTCTTCACTGTCACCTTCTATGGCGCCCTCTTCAGAGAGgGTGACGTTTGGATCTGTATGGAGCTGATGGACACATCTCTGGATAAGTTCTACAAGAAGGTCATTGAGAAAGGCAAAAACATCCCTGAGGACATCTTGGGCAAGATCACTGTAGCAATTGTCAAGGCATTAGAGCATCTGCACAGTAACCTGTCAGTGATACACAGAGATGTGAAGCCCTCTAATGTTCTGATCAACACTGAGGGCCAAGTGAAAATGTGTGACTTTGGCATCAGTGGCCATCTGGTGGACTCTGTGGCTAAAACAATGGATGCAGGCTGCAAGCCCTACATGGCGCCTGAGCGGATCAACCCCGACCTCAACCAGAAAGGCTACAGTGTCAAGTCAGACATCTGGAGTCTTGGTATCACAATGATTGAGCTGGCCATTTTGAAATTCCCCTACGACTCATGGGGCACCCCGTTCCAGCAGCTCAAACAGGTGGTGGACGAGCCGTCTCCACAGTTGCCCGCCGACCGTTTCTCCCCAGAGTTTGTAGACTTCATCTCCCAGTGCTTAAGAAAGAAGCCAAATGAGCGACCAGCTTATACAGAATTAATGCAACATCCGTTTTTCACCGTGCATGACTCCAAAGACACAGACGTGGCCAGTTTTGTCAAGGTCATCCTGGACGAGTGATGGGCTCCCTCCTGGCCCCGGCCCATCGGGGTAGGCGGGACCTCTCAGCAAACAAACCAATggcctaccttttttttttttttttaaactcactgGAATGACAGACTCTcatgcacccacacacaacagGGGGATGACCCAAAGAGCCCACCAGCACTGGAGTGGGACAGTGGTGGTAATATGAACTTGTACGGTCAAAAACCAACTGGAGAGGTTTATTTCGCTCCTCAAAGCTTCCTGTGTGTGCAATTATTCAACATGACAAATATGAACTgaaccagatttttttttattttttttttttcttgttcttttttgccccactgccccttttctatctctctcctcAGAATGGACAGAGCCAGCCATCATTTCTTTGTGACacatattgtatgaatactTTGAATTTCATCTGCAAAACCAACAGTTTATGTTATTGTGTATTGAAGGCTGTATTTGCATAtgagtttgtatttttttctcattataCAGAGTTTTGATACTTTATATCGTCAACAAGTGTGAATTTTACCGAACTAGGGCCTTATTTGTCAGTTGGCATCAGGTGAACACTTTGACCTGGTTCTGCCCTGAGGTGATTGGTCAGTGCAGGGGCTGCAGTTGCCATGGGCCGGGTCGCGGGAGGCTCCAGAGCTGAGACAAAACATGTAAGAAATGTCAAAGGTCACATTCTGGACCAGAGTTGCAAGTCATTTCTAGATCTCTTGGTGGCGTGACGCAGGAATGTAAAACGTCCCATATCATCTGATCCGATCGTGATCCGAGCTGACGACCTTCATGCAGTGACCCCTCTGTACTCGTCGTCTTCTTTCTTGGGTATTAATGAGTCGGCTTCAGCGCTGCCATTGTTACTTTCTGAAAGTATTCAGGGGTtgccttttctctttctgtgtgccATTTTTGCGAATCGTTCTCATGAATTACTGCAttaattgtgttttttcttttctttttggacGTGTTCTGGCCtgcattttgattttatttcagCAGCATTTAAACTCATACATTTGCCTACAGTTTCCAATTCTGGAGTCAGCATAGTCTTTTCATACGAGGCActtatgtatgtttgttttttccagagACCTTATTATGCATTACACAGGCAGTATGTTAGGGAAATAATTTATGTGTTGAAGATGTAAATACTCTCCTTTTttaatgtaatatggcactgtCCTAACTTGGCAGTGCAGATGAGTGGTAGTTGTTGGTAGTAGTTAGTTTTAATGCAGTGTGACACGCATACACAAACACTTGTACTCACAGGGCCAGCTGACTATTGTACACCTATTTTGGACTGATGTGCTGTCAGGCTCCACCGCTCAGGTTTCTGCGCCCTCCTTCATGCGGAGACGGCCCCATTTATTATTCCCCAGGTTGTACTCTCCTTGAGTGCCGGACCGAGAGCCTGTTTTCAGTCTATGGTGGGCATCCATTATCTCTTCTGTCTGAACATACTATGCAGAGCCCCTTCACCTTGGATACTCAGCAAGAGGCCCTTGCCATGTGGCAGTTTCCCCACTCCCAAGTGTTCACAGACTGTGATTGTGATGATGGCGATGATGGTAATGACTGCAATGCCTCAGTTCATGGCTAACACTCATCGCATCTGGTTTACACTGTAGTGCAACCTTTATCAAAAGTCAGTGAGTTAGGAGTATTTATGATTGTGAAAAATAAGGGAAAGCTTGCAACATCACAAAGAAGCTGctattttttcccccctttttttgtttttagtcaGCCTTCTTTGATGGCCATTCCCTTGGTGTGTGTATAAGTGAGTTTTACGCGGATCACAATGAGAATGGAACACTTGCTCTACCTCTTACTCCTTCACTCTATTTGCCACCTTTTCATTGGGTGGGACTGACAAACTTGAACTgtggaaagacaaaaaaataaaggctTTATTGTTCAGTA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04433 MAP2K6, MKK6; mitogen-activated protein kinase kinase 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210082 lncRNA downstream 41344 14895379 ~ 14895624 (-) True G155025
TU210075 lncRNA downstream 54063 14879627 ~ 14882905 (-) False ush1ga
TU209980 lncRNA downstream 272297 14627750 ~ 14664671 (-) False G154948
TU209979 lncRNA downstream 272297 14662048 ~ 14664671 (-) True G154948
TU209985 lncRNA downstream 289899 14640102 ~ 14647069 (-) True G154953
TU210102 lncRNA upstream 13156 14963233 ~ 14963846 (-) True G155039
TU210111 lncRNA upstream 35057 14985134 ~ 14985364 (-) True G155047
TU210145 lncRNA upstream 52979 15003056 ~ 15007022 (-) False LOC120573849
TU210204 lncRNA upstream 183880 15133957 ~ 15139853 (-) False LOC120574278
TU210217 lncRNA upstream 206352 15156429 ~ 15162435 (-) True G155106
XM_039823774.1 mRNA downstream 47486 14882288 ~ 14889482 (-) True ush1ga
XM_039825829.1 mRNA downstream 62336 14869942 ~ 14874632 (-) True LOC120575176
XM_039825721.1 mRNA downstream 79388 14854129 ~ 14857580 (-) False LOC120575102
XM_039825722.1 mRNA downstream 79391 14854129 ~ 14857577 (-) False LOC120575102
XM_039824442.1 mRNA downstream 109579 14795646 ~ 14827389 (-) False LOC120574214
XM_039824984.1 mRNA upstream 187 14950264 ~ 14954273 (-) True btbd17b
XM_039824989.1 mRNA upstream 14218 14964295 ~ 14969477 (-) False ccdc137
XM_039824988.1 mRNA upstream 14218 14964295 ~ 14969235 (-) True ccdc137
XM_039823823.1 mRNA upstream 23275 14973352 ~ 14975399 (-) False LOC120573908
XM_039823822.1 mRNA upstream 23275 14973352 ~ 14975005 (-) True LOC120573908
TU210040 other downstream 79411 14851939 ~ 14857557 (-) False LOC120575102
TU210041 other downstream 79411 14851939 ~ 14857557 (-) True LOC120575102
TU210042 other downstream 108748 14796026 ~ 14828220 (-) False LOC120574214
TU210021 other downstream 146190 14790056 ~ 14790778 (-) False LOC120574213
XR_005641939.1 other downstream 392976 14534971 ~ 14543992 (-) False LOC120574989
unassigned_transcript_852 other upstream 48696 14998773 ~ 15000144 (-) True LOC120574429
unassigned_transcript_853 other upstream 59721 15009798 ~ 15010340 (-) True LOC120573850
TU210305 other upstream 493087 15443164 ~ 15449503 (-) False metrnla
unassigned_transcript_854 other upstream 614056 15564133 ~ 15564204 (-) True trnae-cuc_25
XR_005641871.1 other upstream 767770 15717847 ~ 15724422 (-) False tecra

Expression Profile