RNA id: XM_039825686.1


Basic Information

Item Value
RNA id XM_039825686.1
length 3494
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC120575081
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5111472 ~ 5123509 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGAGGGGGAGACAGACTCGAGTGGAGAGAACGGCCGCCAGTGCTGCTGAAGCTTCTCAGGGACTATCAACAGGGAGCGCAACCGACGACAGAGCAAAGAGCTGGGGGTATGAGAGCCGCCAGAATCCGCTCCAATCCTCTTCAGTCCAGGCCCCTGTCCGACTGACAACTATCGGATCAGAACCTCCACTGAACCAGCTCTCGGACGAACCCAATATCGGTGGTGACTCGCAAACATGGAGCTGAGAGTGGGGAACAAGTACCGGCTCGGGCGGAAGATAGGGAGTGGCTCCTTTGGCGACATTTACCTTGGTGCCAACATTGCCACTGGTGAGGAGGTAGCCATCAAGCTGGAATGTGTGAAGACCAAACACCCACAGTTGCACATTGAAAGCAAGTTCTACAAGATGATGCAAGGAGGAGTGGGTATTCCATCGATAAAGTGGTGTGGTGCAGAGGGAGACTACAACGTGATGGTAATGGAGCTGCTCGGTCCCAGTCTGGAGGACCTTTTCAACTTTTGCTCCCGGAAGTTCAGCCTAAAGACGGTCCTGCTTCTGGCAGACCAGATGATTAGTCGCATTGAGTACATCCACTCCAAGAATTTCATCCATCGGGATGTTAAGCCTGACAACTTCCTAATGGGGCTTGGCAAGAAGGGTAACCTGGTGTACATCATTGACTTTGGCCTGGCCAAAAAGTACCGCGATGcccgcacacaccagcacatcCCTTACAGGGAGAATAAAAACCTGACTGGCACAGCGCGCTACGCCTCCATCAACACACATCTTGGAATCGAGCAGTCCAGACGTGACGACCTGGAGTCTCTCGGCTATGTCCTCATGTACTTCAACCTGGGCTCCCTCCCCTGGCAGGGACTCAAGGCCGCTACCAAGAGACAGAAGTATGAACGAATCAGTGAGAAGAAAATGTCCACACCCATCGAGGTTCTTTGCAAAGGATACCCTTCTGAGTTCTCCACATACCTGAATTTTTGCCGTTCACTCCGTTTTGATGACAAGCCAGACTACTCTTACCTACGACAGCTCTTCAGGAATCTGTTCCACCGTCAGGGTTTCTCCTACGACTATGTCTTTGACTGGAACATGCTCAAATTTGGTGCCAGTCGGACAGCCGAGGATGGGGATCGGGAGAGGAGGACGGGAgatgagcgggatgagcgtaTCGGAGGAGCCCCGAGGGGGTCTGCATCGCGGGGCCTGCCCCCAGGTCCCAACCCTGCAGCTGCCAACAGAGTCAGGAATGGGCCAGAGCAGGCCATCTCTAACCCTGCCTCACGGGTTCAGCAGTCTGGGAACACGTCACCTCGTGCAATTTCTCgcgcagagagggagaggaaggtgAGCATGCGGCTCCACCGTGGGGCTCCTGCCAACGTATCGTCCTCTGACCTCACAGCCCGTCATGACCAATCCAGAATTTCCACATCACAGGTCAGCGTGCCATTTGAGCACATGGGGAAGTAGAATTATTTGGCTCTGCATGCACATGAAACTGACAGGGCTGCAAGGTATATTCATCGCTccgattttattttcctttttattcttACCTTGTTTTATGAAAAGATGATTGCCAATGGACACATGGATCTTTGGAAAAGGACCGTAAATCTTTAAAGGACCGTAATTCTTTAAAGGATCCAGAGAAGTACATGGCAGTATCCAACACGCACTCTTTAATGGACCCTTTTTGCTGAACCGTGGACCACCACCGTCCCCACAATACAAAAAGCAAATGAGTGACAGTCCTACACCATTTTTACTCCCATGGTTGCTCATACCTGCTCCACTCATTAAAAAATGTCCCTCAGTACCTTCTGTCTGACAAATGTGAAGATCTGTTTGCATCAAAGAAGCAAAACTGTATCAGGGACACACGCATGATTCTCGTCATAGGTCAACTTAGTGATTAATAATAGGCTTAGTAAAGATTTATCttaatttttctttctttttccagtTAAACACCGCAACATTTCAGTGTGTCATCTTGTATGAGGATATCTTAAATTGGAGCTTGTTATGAGTTTCCTTTCTTTGCTTCTTTCTGAGAGAAATAACAgctaaaatatgaagaaatggGGAGCGGTAGGTGAGAGGCTAGTGGACAAGAAGAAAGGCGACTTTGAAAAGGATAAGTAGGTGATGTTTTAGCTGTTGTAGAGTAATGTTTCTGGTGAAGTAGCAGTTGGTGCTTGCTTGCCCCCTTCATCCATGTTGTGATTATTTGCTGTCCCTCAAAACTCACCAAAACTCCACCACCCCTTATGTTGCCTGTTTGGACTTGCGTGTTTTCTTTGGTTTTAATGTGGGCGGGTAAGGTGAAGAATGACATAGATATTGCAAAGACATACTCCCAAGTCTTGAGGGATGGTCCTCAGGAAATCCTCAGTGTATTTGACCAGAGACCATAGCTGCCCGTTTTGGCTAACAAATAGTGGCTGCAATTTTTATGATTGTTCTAAAtgttacctttttattttattttttaattctttttgtTATTGGAGGTCATAGGGGAGTAGGCAGGCTCTTTTGGGGAAGTCTCTTAGGGGGATGGGAtatcaatgatttttttttttttttttatgtttacttcactgtaaatatttttttatttccatgtaAAGCCAAAATGTGGTTATTTGTTTTACAAcataaagttgaaaaaatgtatacTAATGACATAAATTGGGGCTGGGTTCAGAATTTTAGGCATTTTAAAGTACTAAATTGTGGGATAGGCTACTGTTACTTTGCGAGCTGGGTCAtcaaatattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagtgatacAGGGAATCCCTGCTAAAAATACAATTTGTTCATTTTGTCTGTTTGTAGATAGTTTTTATCCCCTCTGCTATTTATGTTAAACTATTTTTTATGGGTCTGAAATAACTTTGTCCTTTTTTGttcttatttttgttttcatttcatctTCCTGTAACTTATTAGAAGTAGCTTGTTTGTTcaggttattttttttgcctgtccctttcttcttctgttcttGTGCTTCAAAGGTTGTCCACCTCCTTATAATAAATAGGGCTTTTAATATTCCTTCTGCAAAAATGATATGCTAATAGTTtgatgtcaccttttggattttAACCTCCAGCAACTTTGATGATGTCATTCAAAGGAAAACATAACCGATGCAAATGCAGGGATgtgtaaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtataattACCTTTGTACAGGCCACCATGACCCAGTAGCATTGTAACTGTTGGGAACGGTATAGAAGAGGTTGAGGTGATGGGGATTTAACTTTATGTATTGTGTACTGATATCTTGTACAGTTCTTTAACACACTTTATTTACAACAGTATTTGTGTATATTTTATGaagtaataaaaatgaataatgtTGCTCACAACTGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08960 CSNK1E; casein kinase 1, epsilon

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205857 lncRNA downstream 87380 5013517 ~ 5024092 (-) True G151951
TU205827 lncRNA downstream 218154 4869887 ~ 4893318 (-) True G151924
TU205683 lncRNA downstream 345979 4761732 ~ 4765493 (-) False LOC120574081
TU205665 lncRNA downstream 527312 4583204 ~ 4584160 (-) True G151799
TU205653 lncRNA downstream 587898 4521833 ~ 4523574 (-) True G151790
TU206013 lncRNA upstream 46795 5170304 ~ 5170652 (-) True G152052
TU206047 lncRNA upstream 164349 5287858 ~ 5290361 (-) True G152081
TU206072 lncRNA upstream 266996 5390505 ~ 5395115 (-) True G152104
TU206076 lncRNA upstream 322994 5446503 ~ 5448057 (-) True G152107
TU206259 lncRNA upstream 385208 5508717 ~ 5509392 (-) True G152233
XM_039825683.1 mRNA downstream 160 5095785 ~ 5111312 (-) False LOC120575080
XM_039825684.1 mRNA downstream 3103 5093585 ~ 5108369 (-) True LOC120575080
XM_039825685.1 mRNA downstream 3103 5095785 ~ 5108369 (-) False LOC120575080
XM_039825694.1 mRNA downstream 18331 5083750 ~ 5093141 (-) True LOC120575087
XM_039825693.1 mRNA downstream 39373 5063039 ~ 5072099 (-) True LOC120575086
XM_039825679.1 mRNA upstream 1453 5124962 ~ 5139360 (-) True LOC120575075
XM_039825678.1 mRNA upstream 2935 5126444 ~ 5141113 (-) False LOC120575075
XM_039825680.1 mRNA upstream 19602 5143111 ~ 5161937 (-) True zmp:0000000896
XM_039825691.1 mRNA upstream 152698 5276207 ~ 5279281 (-) True LOC120575084
XM_039825689.1 mRNA upstream 152711 5276220 ~ 5281641 (-) False LOC120575084
XR_005641996.1 other downstream 646481 4418726 ~ 4464991 (-) False LOC120575466
XR_005641995.1 other downstream 646481 4418968 ~ 4464991 (-) False LOC120575466
TU205631 other downstream 683171 4416177 ~ 4428301 (-) False LOC120575466
TU205621 other downstream 744139 4361848 ~ 4367333 (-) False LOC120575464
TU206002 other upstream 54807 5178316 ~ 5227241 (-) False G152043
TU206001 other upstream 55555 5179064 ~ 5183655 (-) False G152043
TU206003 other upstream 55555 5179064 ~ 5187041 (-) True G152043
TU206084 other upstream 338337 5461846 ~ 5464418 (-) True G152114
TU206270 other upstream 425809 5549318 ~ 5554250 (-) False top3a

Expression Profile