RNA id: XM_039825715.1


Basic Information

Item Value
RNA id XM_039825715.1
length 4024
RNA type mRNA
GC content 0.51
exon number 19
gene id recql5
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8488379 ~ 8504839 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTTGCGACGACACCACAGACGCTTATATGCTTTATTTACATAGAGATAAACGATGACAACAACTTCAAAACAGGCTTTAAAAACCCACTTTGGGTTCGACAACTTTCGGTCTAAGCTACAGGAAGATGTTGTCAAAGCAGTCCTCAAAGGTGACagggatgtgtttgtgtgcatgcccACTGGAGCAGGAAAGTCCCTCTGCTACCAGCTGCCTGCTGTCCTGGCTGAGGGCATTACTCTGGTTATATCCCCGCTAATCGCTCTCATTCAGGACCAAGTGGACCGCCTGAAAAGTCTGAACATCCCTGCCTGCTCCATCAACTCCAAGCTCCCGGCAGGCGAGCGCCGTCTGATCCTGGCTGACCTAGGGAGCAGCAGCCCCAAGCTGAAGATGCTCTACATCACTCCAGAGATGGTGGCCTCTCCCACATTCCAGCCCTGCCTGACGGGCCTGTGCTCCCGCGGCTTGCTGTCTTACCTGGCTGTGGACGAGGCTCACTGCGTCTCCCAGTGGGGACACGACTTCAGGCCAGACTACCTCAAACTGGGAGAGCTGCGCAGTCGCTTGCCAGGGGTTCCCTGTTTGGCCCTGACAGCGACAGCGCCCAAGAATGTACAAGAGGACATTGTTCAGTCCCTGAGACTGCGCTCGCCACTGTCTTTTGTTTCACCTGTCTTCCGCAGTAACTTGCACTATGATGTGATCTTCAGGGAGCTGCTGCCAAACCCCTACGTCCACCTCTACGCCTTTATTCAGAAGGCACTGGGACTGGACAAAGGCTCTAATGGACAGGGTTGTGGGATTGTGTACTGTCGGACCAGGGAAGGCTGTGAAACAGTGGCTCACCAGCTGACCAAGCTTGGAGTCTTGGCCAAACCGTATCATGCAGGTCTGAAGGCAGGGGATCGCACAGAGGCCCAGAATGAGTGGATGGAGGGGAAAGTTACAGTCATTGTAGCCACTATCAGCTTTGGTATGGGAGTAGACAAGGCCAATGTCAGGTTTGTAGCTCACTGGAACCTCGCTAAGTCCCTGGCCAGTtactaccaagagtctgggcgAGCTGGGAGAGACGGACTGCCCTCCTCGTGTCGCACATACTACTCCCCGAGAGATAAGGAGCAAATTAACTTCCTTATCCGCCAGGAGGTTGCCCGCAAACAGGCAAAACGGGGCTCTGAAAAGCAGACAGACAAAACAGCCATTACAGACTTTGATGCCATGGTGTCCTACTGTGCTCAAGAATGTTGCCGCCATGCCACCATCTCCAAGTTCTTTGGGGACAAGACGCCAAACTGTGCAGGTGCCTGCGACTACTGTCGTAACCCCAAAGCTGTGCGCGCCCAGCTGGAGAGGGCGGCCACCCTCAGCACCAAGACGGAAGCTCAGAGCAAAGGGCCCACAGGACCGTTCGGTTTCCAGCCGGGCCTTTATGAAGGAGGAAAGAAGGGCTATGGTTTTGAAAGGTATGACGAAGGGGATGCCAGCAGTGAAGACGATGGCTCAAACAGGAAAAAGGAGTTTTCAGACCTCTTCAAGAGGCAGATGAACATGCGGAAGGTCACTGACAGTCAGAGGGAAGACTTTGTTCCCCCAGATGCTGACTGCCCACTCAGAGAGGCCAGCAGTCAGAGGATCCCCAGACTCACTGTAAAGGCCAGAGAGCACTGCCTGTGCCTCTTGCAGGAGGCATTGTATGGCCACCAGGGGGCAGAAGACTCATTCAATCGCTCTACGttgtcctctctgtctctcggcAGTGACACCCTGTCTGTAGCGGTGGATATTGAACATGAGGTCTTCAAGAGCAGCAAGTCCTCCAACCTGTACAAAGCTGCTGTCCTAAAGAAGGTATCCGAGATGAAGAAAACTGCACCTGGAGAAAAGGGAGGGGGCGTCAAGACCGACGGCAGCAGTGAAACCAGAGAGAATGAGTCAAAACTCAAAGAGgaaccttcctcctcttcttctgccTCCTTCTCTGAGGAGCTGCAGGGGTTCACGTCTGCATCGGAGATCTACTCTATGAAGCGTAAGAGAGTAGGAGCAGGTCTGAGGGGATCATCCGACCCCTTCCAGACCGCTAAGGATCTGCTGAAGGCCTCCGTGTCGGACACCGTGTCTAACAAGGGGACAGAGAGCGGCGGATTTTACAGTGACAGCTCAGGAGGCTCCGGAGGGACAAGCGCCGACGCGTCTTCGGCTGTAACGTCCTCCATCAGAGCCAGAGCGAACGCCGCCGCCACCTCCACGAACAGCCCGACGAAGGCGGGCAGAGCCATGAGCAAGAAGCAGCAGAAGCTAGCGGAAGCGGCAAAGAGCTCCCGCAACATTTCCCACTATTTCGCCAAGAAAGAAACCACGGCGGACGGCCAGGAGGAGGCGGAGACGCCGAGGGGACTTGATGCTGCGTTAGCTCACGCCACAGCGGCGGTCGCTCAAGAAAGCGTTAGCGAGCAGGAACACTCCCCTGTCACCGTGGACGATGTAGAGATGAGTCCTGTAGAGACTCAGGATGTGATCCAAgaagaaagtaaaaacaaagtcatagttattactgatgatgaagaggaggaaaatCATAAAACAGAGACGCTGGAGCAGCTTCAAGACACATCTATAGAGTATACGAAGTCCACTGCAGAagaaaacaaacctgAGGATGAAGCTAAACCACCTCTAACAGAAGGGTTGACAGATGATGTAAAAGCGAATAAGAGCGAGTCGTCTCCTCCAGCGAAGCGCAGCCGCCCCTTAGACAGAAGAGTAACGTTCAACCCCAATGTGCAGGAGAGGGCCCTGATCCCCGCCAATGAGCCACCCAAGCCTGTGACGCTGAAGGAGGCCGCTGATATCGTGGTCCGCTATCTGGACCCCTTTTACACTCAGGGAAAGTTTGCCACCAAGGAGCTGTTTAAGTCCTTCGCCCGCTACCTGTCTCACCTTCTCACAGAGGGCAGGAGTCGGGGGAAAGGCCAAGTTAAAGCAGAAGCCAAAGCTATCATCAAGAAGTTCTTCAGCAGAGTCAAGCGCTGTGAGAGCGAGGCAGACTGGAAGCACCTAAAAAGGCCGCAGAGCTGTAAAACCACAGAGAACAATGAATGATGAGGCGTGGAAATGTAGCCATTTTAGGGTCGAACCCTTCCTCTTTTGTCAGTGCCTACGCTTGTCTCGTTCCAGTGAACTTAGGCTTTACCACAGACGCCTGCTGATCAGCTTTATGgttgatttgctgctttttccaGACTCTAATAGCTTATGTAAGTAATTGAGCAATAATGTGGGCTGTGACAGCCTGAGAGAACACAGGTCAAACTGTGTGCACACTCATATGACCGGGAATGACTGTTTATGTGTATGAGCAATGTATGTGCAGCAATTGGTCTTTATTCATTTAACTACAGTATGGACCTTTTGTGGGACTgcactcttcttcttttttcaagTCCATTAAATCGCACTTAAATCTCCAGTAAAATATGTTTCAAGTCTCTGCAAGTTAAGTTTTCATACGGACctgaaatgaatggaaaccaaAGGCTTCTTGGACTAAACAAGACTAAAGTGtctgcagccatgctagcagctctgtgacgCTGTACAcggcagtgctttgagctaaatgctaacatgcgcactaaacatttgctaattagcactgaactcaaagtacagctgaggctgatgggaatgtcattagttttgcaggcaTTTGGTTATAAACCAATTAAAcggtgctagatgaaaagttaggTCAGTCAGATCACTAAAGTCATTAGTGTTCATCCTGTGTGGACCATGTAAGTAAGTATGAAACCAAATTATATGGAAATCTATCAAATAATTGTTGATATATTTTAGTGtagaccacatgtgtcaaactcaaggcccgcgggccaaatgcGGCCCTTTGTGGATTTAGATCccgcccgtatatcaatttgggttcacaatacattttggcccacctagttgtgcgccaaaccaaaaacacaggaaagtgttttttttaaactgcaat

Function

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207395 lncRNA downstream 18086 8468304 ~ 8470293 (-) True G153112
TU207389 lncRNA downstream 33711 8450022 ~ 8454668 (-) True G153106
TU207140 lncRNA downstream 195122 8293038 ~ 8293257 (-) True G152925
TU207139 lncRNA downstream 196164 8291900 ~ 8292215 (-) True G152924
TU207064 lncRNA downstream 396110 8087926 ~ 8092269 (-) True G152863
TU207409 lncRNA upstream 35539 8540378 ~ 8588188 (-) False G153124
TU207415 lncRNA upstream 35539 8540378 ~ 8588188 (-) False G153124
TU207418 lncRNA upstream 46457 8551296 ~ 8611997 (-) True G153127
TU207412 lncRNA upstream 49669 8554508 ~ 8588188 (-) True G153124
TU207413 lncRNA upstream 82000 8586839 ~ 8588188 (-) False G153124
XM_039826280.1 mRNA downstream 3687 8474480 ~ 8484692 (-) True cdr2l
XM_039826258.1 mRNA downstream 186108 8297738 ~ 8302271 (-) True nptx1l
XM_039823722.1 mRNA downstream 346546 8137587 ~ 8141833 (-) False LOC120573855
XM_039823725.1 mRNA downstream 346548 8137584 ~ 8141831 (-) False LOC120573855
XM_039826095.1 mRNA upstream 1478 8506317 ~ 8511840 (-) True LOC120575363
XM_039823763.1 mRNA upstream 8790 8513629 ~ 8520587 (-) True LOC120573875
XM_039823764.1 mRNA upstream 8790 8513629 ~ 8520585 (-) False LOC120573875
XM_039824671.1 mRNA upstream 122244 8627083 ~ 8640435 (-) False rabep2
XM_039824670.1 mRNA upstream 122244 8627083 ~ 8640433 (-) True rabep2
TU207167 other downstream 43998 8441179 ~ 8444381 (-) True G152952
XR_005641918.1 other downstream 387981 8082138 ~ 8100398 (-) False LOC120574885
TU206683 other downstream 1767736 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 2260265 6182408 ~ 6228114 (-) True G152441
TU206278 other downstream 2874711 5610556 ~ 5613668 (-) False atp5mf
TU207482 other upstream 226558 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 307503 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 348921 8853760 ~ 8856957 (-) True tufm
TU207546 other upstream 348921 8853760 ~ 8857571 (-) False tufm
TU207547 other upstream 348921 8853760 ~ 8856957 (-) False tufm

Expression Profile