RNA id: XM_039825759.1


Basic Information

Item Value
RNA id XM_039825759.1
length 3208
RNA type mRNA
GC content 0.38
exon number 6
gene id desi1a
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6576144 ~ 6585025 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACGGGATAACGTCATTCTCAGAGCACCCCCTTCTCAGTCAGCTGTGCTGTTGCTAAGCCAGCCaacagaaaaattaaaaaaagctatTTGAAGGTTTACATTATGGATAAGAACGCTACGCGATACAATGTACAACTATATATTTATGACCTATCGAGAGGAATGGCCCGCAACCTCAGTCCCATCATGTTGGGAAAGCAACTGGATGGTATATGGCACACAGCTATAGTGGCATACGGCGATGAGTTCTTCTTTGGAGGGGAGGGGATCTCCAGCTGTTCGCCGgGTGGGACAATGCTGGGTTCTCCAGATACAGTGGTAGAGCTGGGTGAGACTGAAGTGTCTGAGGAGATCTTCATGGATTACCTCTCTTCCCTGGGAGAAAGCACATACAGAGGGGACAGGTATCGTCTGTTTGAGCACAACTGCAACACATTCACCAACGAGGTGGCTCAGTTCCTGACGGGCAGGTCCATCCCGTCCTACATCACTGACCTTCCATCGGAAGTCCTCTCCACACCGTTTGGCCAGATACTGCGGCCCATTCTCGACTCTATCCACATCGCCCCTCCAGGAGGTAACGTCATCAACGGGGGGAGAAACGTGTAAccagagagagcagcagagtcACTGAGTGCTCACAAGGTCACTTTTATTGTAGTCAGTCAGTCAAACtaattgtctttctttctttttttcctttctttctgtaaATAAGTTACACACTAGCATTGAAGCTAATGGCCATTTTGGAagctatgacttttatgatttACATATACTGTAATGTTCTCCTTAAAAACCTAGTTGGCTCATGAATACTACTTGGAGGGAACTCACAGCCCTCTTCATGGGTGCATCTGGCATCATATTCAATGTACTTAGAAAACACAGATGGAATTTTGGGTTTACCAGCATAGCCTGATATCAAAACAGTTACCTTCCAACACTAAAAGCTGACTTTGATGAATGTTGCCTTCttataaatactgtacatgtatggAAAGTCAGAGGTCCACTTAAGCTTTTTCAGAAGTATAATGTAACAAAGTATATTTTGATTTTGGAGCACTGCAAcgtgatttagcatttacatttttgcaagaatttatacttttactccacgacatagaaatattgcactttttactccacgACATTTATCTGATGGCTGTAATTAAACCACctacaacattaaaataccTCTTGCACATTAGTGCATCTAGCTTATTTAGTACTCTAACTAACTACTAACTTTTGTACTAAGGTACAAAATGCTTgcttacttttatttaagttggaaattgtagtttttttcccattttagTGTTGCAATGTTTAGTTATTTATTatgaaatttagtttttttcactactgacattattaaattattatatataacatATCAGGTTTCCCACATGGTTTCTGCAGTGAGAATCTTCTGCTGCTGACTACAATGGAATTAATCTGAGTGTACACTTTTGCATAGATCCGTTTAATATATTAAAATCAAAGGACACAGGTTGATGGATAATAAGAGCAAGTTGGTTGGAGAGTCTTTTATTGttaatcattttttaatttatttgaatTTTGCACTTCTATgattgtttttacttgttttgttaTTTGGTAGCCTGTAGTTAAATTTCCTATCAGTGATCCCTTCATACTGTACCTGTAATATTTGtctgaatgttttttgttgaaTTCAACTGTACCTGACTATTATAATTCCATTTGCCACATCATTTGTGACACAGCAGGTGATTGATGCCAAACTCACACTGAGGTTTATAAGATTAGAGGTGATATAAAAATTGTGTTGAGTGTATGTCTCTATAGCAGGACTGGGATCAGTTCATTGTAAATTCCCATGTGTATGAAAGTAAACCCCGGTTGACATTTGAATAGCAGAGCTCATTACAAAAGTGTACATTTTCCGGACAATCTTTAAGTTTAAAACAACAACCGTTTTCTTGGTCAAAAATAACgaaaaatttaattaattctATTCTCTGATATAATTGAAAGTGAACTGCACCACAGCCCTGTTATATGATATAAGTTGTGCCTCTTGCCCTGCGTTACCAGCTCCACAGAGATGCTGATCTCAgatacattacattttattataCAGATTTCTGTTGCCATATGGGTAATTCTTAACAACTGCTCACCCACAGGTTTTCTTTTATAGTAGATGTGACCATATGCAGGGCAATGTCCTGTACTGGCAACTTAATAACAATCTGCTTGAGTCCTTTAACAGCCACCAGAGTGTGTTGGATATACAATACACCTCTGTGCCTTCATTTCCCTTTGCTTGGCTACAGTCACACTGTTGGCAGTTGGCATGGTTATCGTATAGCACAGATGGTAATCCCTGTGCAGTCTGCATTCATATCTGCTAGTTAGTTTGCTGTGCAAAGGTCCAGAAATCTTACACAAACGAGGTGAAAGGGGTTAGGATTAGTAAGGAACACTCAGCTCTATTCTGTAGATAACGTAAACATCTGAAAATATTCTAGATTTAACAACATCTGTGTTAAACAACACTCACAGCCTATAATCTCATTGCATTATACACTGCACTCTGCCGTCACAAAGAACACGTCTGTTTTAAAACTAATGCATAGATGACGTTTTAGGGTTTATCTGATTAGGACAGTGTTAAACACATGAACCACGTTAAACCTCATGAGCCTGAACAGAACGAAGGATCCGAGAAGCACAGAAAAACAAGAAATCTCAAAGAACGCCTAAACCAGCATTAACTTTCATTGTGTTCTCATGCAATGAATACACCTCACACACATTTTACCTTCCAAGCAGTCACCATTTCTCTCGTGCACCTGCCTATAAATATTGGATGTGCAAGCATTTCAACACTTTATTTTCAAACCTGATATTTGTAAGTATTTGGCTATGATTCGAGAAAGGATCTGGGATCTGTTATTTTTGCCTTCTGCTAACCAACTAAGTGACATACTAACCAGTGTAATGTATTACTGCAGGGGTCACCCTTTCTTGCTCTGATATGTTGCTGGCTGCTACCTGTAATGTGAAATTGCGACAGATAGTGATGGATATTATTCTCTATTTAAGTAATCTAACTATAGTAGATTTGTTTATGCATATTGTTTGTgtagtagattttttttttaaattataaatcTACCTACAAATAAAGCCATTGACTACAAA

Function

GO: NA

KEGG:

id description
K22762 DESI1, PPPDE2; desumoylating isopeptidase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206660 lncRNA downstream 147908 6427328 ~ 6428236 (-) True G152548
TU206606 lncRNA downstream 184546 6387165 ~ 6391598 (-) True G152497
TU206604 lncRNA downstream 194953 6380875 ~ 6381191 (-) True G152495
TU206603 lncRNA downstream 197891 6377959 ~ 6378253 (-) True G152494
TU206601 lncRNA downstream 216856 6359069 ~ 6359288 (-) True G152492
TU206672 lncRNA upstream 12329 6597354 ~ 6597843 (-) True G152559
TU206674 lncRNA upstream 12974 6597999 ~ 6598876 (-) True G152560
XR_005641813.1 lncRNA upstream 124377 6709402 ~ 6711199 (-) True LOC120574035
TU206694 lncRNA upstream 171766 6756791 ~ 6757085 (-) True G152577
TU206823 lncRNA upstream 187855 6772880 ~ 6773713 (-) False arhgdig
XM_039824585.1 mRNA downstream 225880 6345320 ~ 6350264 (-) True ccdc97
XM_039823846.1 mRNA downstream 331725 6229363 ~ 6244419 (-) True baiap2l2a
XM_039823671.1 mRNA downstream 407120 6155299 ~ 6169024 (-) True csf2rb
XM_039824026.1 mRNA upstream 22259 6607284 ~ 6649259 (-) True llgl1
XM_039824028.1 mRNA upstream 65804 6650829 ~ 6698387 (-) True myo15aa
XM_039825833.1 mRNA upstream 126599 6711624 ~ 6718897 (-) True drg2
XM_039825832.1 mRNA upstream 126599 6711624 ~ 6718893 (-) False drg2
XM_039825287.1 mRNA upstream 153086 6738111 ~ 6748409 (-) True znf598
TU206522 other downstream 348030 6182408 ~ 6228114 (-) True G152441
TU206279 other downstream 962476 5574680 ~ 5613668 (-) False atp5mf
TU206278 other downstream 962476 5610556 ~ 5613668 (-) False atp5mf
TU206260 other downstream 993283 5580368 ~ 5582861 (-) False bud31
TU206270 other downstream 1021894 5549318 ~ 5554250 (-) False top3a
TU206683 other upstream 134759 6719784 ~ 6720643 (-) True G152567
XR_005641918.1 other upstream 1497113 8082138 ~ 8100398 (-) False LOC120574885
TU207167 other upstream 1856154 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 2146372 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 2227317 8812342 ~ 8816276 (-) False natd1

Expression Profile