RNA id: XM_039825807.1


Basic Information

Item Value
RNA id XM_039825807.1
length 3907
RNA type mRNA
GC content 0.42
exon number 5
gene id fscn2a
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14740537 ~ 14748030 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACAGAGAGCAAGTGCCTGTGCAAGCCCTCTGGGGAATGAGAGAAAGTGACGGGAGAAGGAAGGGACACTAGACAATCCATCAAGGGAGATAAGTTGAGCTAATTTACAGCTTGAGATACAGAAAAGGGGAGAAATCaagcattttatttttgcttttcaGTTGTTTCATGCCTGCTTTTCCCCATTACCCTTTCCCTTGTTAGTCCTAAACCTCTTTACTTGCAATCTTAACTTGGGCCTCTTCAAGCATGCCCACAAACGGAATTAACAGGGCCCTGAAGCTACAGTTTGGCCTCATCAACTATGAGAACCGCTACCTGACAGCCGAGGCCTTCGGCTTCAAGGTGAACGCCTCAGGCGTCAGCATGAAGAAGAAACAGATCTGGACCTTAGAGCAGGACGAGCAAGATGGCCAAGTAGTGTTCCTTCGCAGCCACTTGGGACGTTATCTGGCCTCTGACAAAGATGGGAAGATCACATGTGGGGCGGAGAAGCCTGACCCTGACTGCCGTTTCCTCATTGTGCCTCAATCTGATGGTCGTTGGGCACTGCAGTCAGAGCTTTACCTGCGTTACTTTGGAGGATCCGCTGACTACCTATCCTGCTTTGCCCAAGCCATTGGGGAACAAGAGCTGTGGGCCGTCCATTTGGCTTTACATCCGCAGGCCAGCCTGCTCAGTGTGGCACGTAAGCGCTATGCCCATCTGTCTTCCTCAGATGGAGAGATCTCAGTAGACAGCAACATTCCCTGGGGTGTGGACTCCCTGGTCACCTTGGTATACCTCGATGGCAAGTACAGCCTGAAGACCTGTGACAGCCGTTTCCTCAGCAATGATGGCAAACTGGTAAAGGAGAACGCCAATACGACTAGCTTCACACTGGAGCTGAAATCTGGAAAGCTGGCTTTTAAGGACTGTGATGGGAAATATCTGACCCCAGTGGGTCCAACAGGGACACTGCGATCTGGCCGATGTTCCAAGCCTGGAAAAGATGAGCTGTTTGATCTTGAGGAGAGTCATCCACAAGTAGTTTTTCAAGCCGCCAATAAAAGATTTGTCTCGGTCAAACAAGGAGTGAGTATTTCAGCCAATCAGGATGTGGAGACAGACATGGAGACCTTCCAGATGGAGATTGATAAGGAGAGCAAAAAGTCTATGTTCAGGACCAATGGCGGATCCTACTGGACTTTAGTGACTCACGGAGAGATCCAATCCACTGCCACAGAAGTaGAGGTCAATACAATGTTTGACATTGAGTGGCGAGGACACAGGGTGGCACTCAAAGCAagtaatggaaagtatgtttgTACAAAGAAGAATGGGCAGCTCTCAGCAGTCAGCGATACAGTGGGTGATGATGAATTATTCCTGATGAAACTCATCAACCGCCCTATGTTGATTCTTCGTGGAGAGAATGGCTTTGTGTGTCACCACAAGAACTCCAACACTCTGAACGCAAATCGATCTGTCTATGACATTTTCTCATTGATCTTCAACGATGGCGCCTACAATGTAAAAAGTGTCAATGGAAAGTTCTGGTACGTCTCTAGCAGTGGCCTAGTGTGCACAGATGGAGAAAAGCCAGAGGACTTTTTCCTTGAGTTCCTGGAACATGGACGCGTCGCCATCAAGGGGTCTGATGGCAAGTACCTTCGTGGAGACCAGGGAGGTACGCTTATGGGTCATGGTACAACCGTTGATGTATCTTCTCTTTGGGAGTATTGATCCCTTTCAATCAAGTTCCTCAAAGAGGGAGCAAGAAGGCGGGGTGCAGGACCCACTTCTAACAAATGAAGCAGACTGACCGGGTAAAAAATTTCTGCCTGTTTTTATACTAGCTGCCTGTtcccatgtttttcttttagtttttttttttcaagaagaGAACACTTTAGGAAGATATGTTTGGTTTTTATTGTACATATTAAATGTTTTGTCTTTCAAATGACAATGCCAACATCAAACAACACATACATGTGTGAGCACATATAATTTCACAAATACAGAATAAGACAGCGGCGGTCCCAATTGTTTCAGCCACACTTTGTTCAATATAGGTATGGTGACAAACAAATATCTTTGAGGGCAGCCACACTGATAAGTCACTGAACAAAGAGAGTTGCTGTCCTAAGTTGTTGTGATGCTGCCTAAAGGACTAAATGAACATTTAGTCCTTCTGCTGCTGATTTTCACTGACTAAATAGACTATATATCTCCAAAAGCTGAAAAAACCTTTGATGATTTCTCTGTCTATCAAAACTGATACAAATCTGGTAGAGAAGGACACCTCACTCCTGAACATTCACAAATTAACTAAATattaatgaaaaacaaacaaatgatggATCAGTGTGGCTGCATTCTTGGGTTTACTAAAGAAACAAACAGGGATACTCTAAATACAAAATTAACTCTATTTGGTCTAGGTGACTAGACCTATGTCAACTATGTTTGTCAGGATCTTACTTCTGTAACCTCTGTCAACAATCCCACTGCATTTGTTTACAGCTTTTAAATGATTTCAATACTTTGACATGTTCTATAAGAACAGTGTGGTCATTGACGTCACTCTAAGCAATGATAATGCACCACTGTCTTCAAAGACAATGGCTGGTGCCAATGGTGTTTTCGTTTTTCTTAATGGACCATTAACAGCTTCCAGCAcaatatgaaataaatgaagTGGACTGGAGCAAATAGACTATTATCTCAGGCACCTCTGCAATGCTGAGCAATGTATATCCAAAGAGGACTTGCAAACACTGAAATAAGTTTTGTGTAACACATAGAAATACAGAGATCAGACATGTTTAGGAAAAAATTCTATCAGTAGACATTTTATATATCCATATCAGGGACAAGCAATACACCAAAGGGGGAGCACATTTAAAGCATTTGATGGACTATACATCATTTTTAATGTACCAGGTATGAACTCAGAAAGTGCTTCTCTGGTGTTCTGCCTCGGGGCCTTAAACCATACTGAACTCTACATCCCTTTATACACGTTCTCATGTTCAGAGTTGGGTGGTATGATTAGAAAATTTAAAGGATTTAGTTATTACATTAGGCCATTACCACAGTGACATCCCATAAAACATACAGAAGCAAATGTGCTCGAATACAAATCCTAAAATaatgtcagtttttttccaTCTGTTTTCCCAGAGTCAGATGAGAAGATGTAGTGAATTTCATTTGTGAAATGAGTGCTCTGTGCAGCTCTTTGCCCAGTGGTTGTTGGTCAAACCCAGCTCCAATGTGGCAGCAAACTTCAGCTCCTTCAGACAGCATTGGAGAACaaacatgttttactttttacaaAGCAGGAATATATGTCTTCCCTCTGGACAAAACGGCAAACAACTGTATTTCACAAAATGCTGGAGTGTTCCTTTAACTAACCTACCCAACACTGCTTTTGTCGAATGTGATCAGTAGCTTCTAGTTGACCCTTATCCAGCACAACCCTTTTAAGGAGgaacttttttgtattttgatcTCACAGGACTCACTGAATTGATTACTCCTGAAACCCATTAAAGGGCACAAGCTGCCCAGACTTTATTGGCACGGATGTTGGTGTGCAGTACAACCTGAACCTGTATACAATTTATCCTGCAGATTTTTTGTCAGTTATTTCCCAGGAAGATATAAGATCTGAAATAGTTCAAGTGTAATGTCTAAATCAATGGTTTTGTGATGTGTGCAATTTGCAATTTATAGAGAAATTTTAGAAAGCAAGGTCTAAAATGCTTGGTCATCTATGCATCCTGTATCAGCTCTTTAGAGCCTCCAGCTATATTTTAGaatgtatttaatatatatagatGTTTATTGTGTCACTATATTTTCGTTTTCTGATAtgatttttgaaaatgttgaTGGCAATAAAAACTTGACAATA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0051015 actin filament binding molecular_function

KEGG:

id description
K17455 FSCN2; fascin2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209980 lncRNA downstream 75866 14627750 ~ 14664671 (-) False G154948
TU209979 lncRNA downstream 75866 14662048 ~ 14664671 (-) True G154948
TU209985 lncRNA downstream 93468 14640102 ~ 14647069 (-) True G154953
TU209984 lncRNA downstream 103735 14633178 ~ 14636802 (-) True G154952
TU209938 lncRNA downstream 211418 14526134 ~ 14529119 (-) False cenpx
TU210075 lncRNA upstream 131597 14879627 ~ 14882905 (-) False ush1ga
TU210082 lncRNA upstream 147349 14895379 ~ 14895624 (-) True G155025
TU210102 lncRNA upstream 215203 14963233 ~ 14963846 (-) True G155039
TU210111 lncRNA upstream 237104 14985134 ~ 14985364 (-) True G155047
TU210145 lncRNA upstream 255026 15003056 ~ 15007022 (-) False LOC120573849
XM_039825808.1 mRNA downstream 10488 14717993 ~ 14730049 (-) True LOC120575160
XM_039825540.1 mRNA downstream 196543 14533682 ~ 14543994 (-) False LOC120574989
XM_039825541.1 mRNA downstream 196544 14533682 ~ 14543993 (-) False LOC120574989
XM_039825542.1 mRNA downstream 196544 14535280 ~ 14543993 (-) False LOC120574989
XM_039825543.1 mRNA downstream 196544 14536227 ~ 14543993 (-) False LOC120574989
XM_039824440.1 mRNA upstream 17704 14765734 ~ 14790772 (-) True LOC120574213
XM_039824441.1 mRNA upstream 47616 14795646 ~ 14828239 (-) True LOC120574214
XM_039824442.1 mRNA upstream 47616 14795646 ~ 14827389 (-) False LOC120574214
XM_039824443.1 mRNA upstream 47616 14795646 ~ 14826872 (-) False LOC120574214
XM_039825721.1 mRNA upstream 106099 14854129 ~ 14857580 (-) False LOC120575102
XR_005641939.1 other downstream 196545 14534971 ~ 14543992 (-) False LOC120574989
TU209766 other downstream 683225 14050738 ~ 14057312 (-) False med9
XR_005641817.1 other downstream 1318586 13335449 ~ 13421951 (-) False prkar1b
TU209391 other downstream 1760852 12973332 ~ 12979685 (-) False sun1
XR_005641885.1 other downstream 1767727 12956522 ~ 12972810 (-) False iqck
TU210021 other upstream 42026 14790056 ~ 14790778 (-) False LOC120574213
TU210042 other upstream 47996 14796026 ~ 14828220 (-) False LOC120574214
TU210040 other upstream 103909 14851939 ~ 14857557 (-) False LOC120575102
TU210041 other upstream 103909 14851939 ~ 14857557 (-) True LOC120575102
unassigned_transcript_852 other upstream 250743 14998773 ~ 15000144 (-) True LOC120574429

Expression Profile