RNA id: TCONS_00006869


Basic Information

Item Value
RNA id TCONS_00006869
length 812
RNA type mRNA
GC content 0.51
exon number 7
gene id XLOC_003508
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27968834 ~ 28010171 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAACGTAAGGTCCTGTGTTGGTGGAATCGCAGAGGAGCAGGGAGAGCCTCAGCGCAGGGAGCTTTCAGTTGTCTGGCACCCTTGGAACGTGAAAATCCGTAAACGCAGGCTGATAGATAACAAAATGAAGGTCGTACAACTGCTTATCCTCAGCTGTCTGGTTTGGGAGGGAAAGACAAAAGTTCAGTTTCCAGAGCAAGAGAAGCGGCCTGATTACTGGAGGGACTTTGCTCAACGCTCACTTAAAGATGCCTTGAAGCTTCAAGAACTCAACAAGAACATTGCCAAAAACATCATCTTATTTCTTGGAGATGggaTGGGTGTTCCTACAGTCACAGCAGCCCGGATTTTAAAGGGTCAGTTGAGTGGACAGAACGGAGAGGAAACACAACTGGAAATGGACAAATTTCCCCACGTCGCCCTCTCTAAGACGTATAACACCAATGCTCAGGTACCAGACAGCGCGGGCACTGCCACAGCTTTCCTCTGCGGTGTCAAAGCCAACGAGGGCACGGTGGGAGTGAGCGCAGCAGCTGTGAGATCCCAATGCAACACCACTCAGGGGAACGAGGTCACCTCCATTCTTAAATGGGCTAAAGACGCAGGCAAATCAGTGGGAATCGTCACAACAACGCGAGTGAACCATGCCACCCCGAGTGCTGCTTATGCCCACTGTGTGGATCGAGACTGGTATTCTGATGCAGACATGCCCAATGAAGCACTGCAGAGCGGATGCAAAGACATCGCCAGACAACTCTTTGAAAACATCCCTGACATTAACGTGATAATGGGGGGTGGACGGAGAAGCATG

Function

GO:

id name namespace
GO:0009612 response to mechanical stimulus biological_process
GO:0016311 dephosphorylation biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004035 alkaline phosphatase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040420-1 Predicted to enable alkaline phosphatase activity. Acts upstream of or within response to mechanical stimulus. Predicted to be located in membrane. Predicted to be anchored component of membrane and integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including anterior neural keel; bone element; central nervous system; gut; and vasculature. Human ortholog(s) of this gene implicated in adult hypophosphatasia; childhood hypophosphatasia; hypophosphatasia; and infantile hypophosphatasia. Orthologous to human ALPL (alkaline phosphatase, biomineralization associated).

Ensembl:

ensembl_id ENSDART00000147984

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006868 lncRNA upstream 224552 27738489 ~ 27744282 (+) True XLOC_003507
TCONS_00008623 lncRNA upstream 237659 27729240 ~ 27731175 (+) True XLOC_003506
TCONS_00006867 lncRNA upstream 319175 27625076 ~ 27649659 (+) False XLOC_003505
TCONS_00008403 lncRNA upstream 319252 27625084 ~ 27649582 (+) False XLOC_003505
TCONS_00008404 lncRNA upstream 321394 27625172 ~ 27647440 (+) False XLOC_003505
TCONS_00008624 lncRNA downstream 421000 28418774 ~ 28424314 (+) True XLOC_003510
TCONS_00006877 lncRNA downstream 444599 28442373 ~ 28446862 (+) False XLOC_003511
TCONS_00006878 lncRNA downstream 444599 28442373 ~ 28447433 (+) False XLOC_003511
TCONS_00008625 lncRNA downstream 448539 28446313 ~ 28447071 (+) True XLOC_003511
TCONS_00006880 lncRNA downstream 519788 28517562 ~ 28519901 (+) False XLOC_003513
TCONS_00006866 mRNA upstream 423115 27543093 ~ 27545719 (+) True XLOC_003504
TCONS_00006858 mRNA upstream 585102 27274355 ~ 27383732 (+) False XLOC_003500
TCONS_00006862 mRNA upstream 586098 27364338 ~ 27382736 (+) True XLOC_003500
TCONS_00006859 mRNA upstream 594302 27347076 ~ 27374532 (+) False XLOC_003500
TCONS_00006861 mRNA upstream 596466 27364059 ~ 27372368 (+) False XLOC_003500
TCONS_00006872 mRNA downstream 109858 28107632 ~ 28126139 (+) False XLOC_003509
TCONS_00006873 mRNA downstream 111629 28109403 ~ 28122454 (+) True XLOC_003509
TCONS_00006874 mRNA downstream 168391 28166165 ~ 28418985 (+) False XLOC_003510
TCONS_00006875 mRNA downstream 168391 28166165 ~ 28421094 (+) False XLOC_003510
TCONS_00006876 mRNA downstream 220367 28218141 ~ 28424186 (+) False XLOC_003510
TCONS_00006865 other upstream 448261 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006853 other upstream 1354247 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006838 other upstream 1890773 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006817 other upstream 2485864 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006814 other upstream 2490416 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006890 other downstream 1354327 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006893 other downstream 1568973 29566747 ~ 29571528 (+) True XLOC_003523
TCONS_00006949 other downstream 2974260 30972034 ~ 30997832 (+) False XLOC_003549
TCONS_00006950 other downstream 2976997 30974771 ~ 30974892 (+) True XLOC_003550
TCONS_00006952 other downstream 3017745 31015519 ~ 31024572 (+) True XLOC_003549

Expression Profile

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