RNA id: XM_039825827.1


Basic Information

Item Value
RNA id XM_039825827.1
length 3017
RNA type mRNA
GC content 0.44
exon number 7
gene id cdr2a
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12844396 ~ 12853731 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACAACAGACTTAACGCCTCACGCACACCGACCGGGAGGATGTAGTTTACATTTCTCCACACACGGTGGTGGACGGCGGACAACTTCAAGCTgctagacatacacacacactcacacacacctgtgtgtcAGGCTTCTCTCAGGTGGAGCCGCTGACACACTCGCCCCGCGGCTGTAAGATGTTAACTGACATGATTTTGGAGGAAGAGTTTGACAAGAATGGAGAGGCTTGGTACGACCCGCAGGACCTTGAACACGATCTCCATTTGGCAGCAGAGCTTGGGAAAACCCTCCTCGACAGGAACCATGAGCTGGAGCAGGCCCTGCAGCAGATGTACTCCACCAACCAGGAACAGCTGCAAGAGATAGAGTACCTGACCAAGCAGGTGGACCTGTTGCGTCAGATGAACGACCAGCAAGCCAAAGTGTATGAGCAGCTAGATGTGGCCGCCAGGGATCTGGAGCAAGGCAACCAGAGACTAGTTCAGGACAGCCGCCTGGCCCAGCAGAAGATCCACAGTCTAACAGAGACCATTGAAGGGCTTCAGACTTACATGGAGGACCTGCAGACTCAAGTGGAGGAGCTAAAGACTGCCCAGGCAGAGCGAAACAAAAGAGAGCTGGCAGAACAACGCCGCAACCTCGGAGCACAGAGTGTGTCCTGTATCAAAGAGCTGTATGACTTACACCATGACAGGAATCTAGCCCACAACGGTCTGCGTGTGGATGGACTCTGGTCACCGCAGTGCTCTTTCTATGACCGAGACAGACGCCAAGACCCGGAGGAGGAGAACGTGGCTCTCCAGCGCTCCGTCCGGACCCTTGAGAGCCAGATAGCTGTGGAGCGGAGCCGCAGGGAGGCTGCAGAGCGTGAGATTGAGTTGACATCCAGGGAGAACATAGACCTGGAGCAGCAGCTGGCCGTGCTGGCTGGCTGCCGAGTCAGGCAGAGGGAGCTGGAGGACGAAGTGGAGCAGCTGCGGCTTCTGTGGCGTGCTGACTGCGCCAACAGTGTCAGAGGACTGGATCAGCTGCAGTTGCCTGAAACAGTATTATTTGCCTCAGAAGAAAGACCGGGGCAGGATGAGATGGAGGAGAAGGTAGGAAAGGATGAGGAGCAGAGAAGATACATCTGGCAGAGGTGTAACAGTGACAGCATTTTGAGAGCGACGGACCCAGATGAGATTCGGCGTGGTCACGAGCAGTTGTGCATAAGGCGAACGGAAGCGGTGAAACAGAGGGGCATCTCTCTGCTCAACGAGGTGGACGCACAGTACAGCGCACTGCAGGTGAAATATGATGAGCTGCTGCGGCGGTGCCAGCAGGCAGACGGGCCCAGCCATAAAGACGTCCAGACATCCAACAGTCCCTTTGGGTGCAGCCGGAACCGCCGCCGGTCCTCAGCCGCTCTGTCTAATCTGACAGTGGGTCTTGAAGACAGCCAGCAGCCCGAATACAAGGCTCTCTTCAAGGAGATCTTCACCTGCATCCAAAAGACCAAAGAGGACCTCAGCAACAACAGAAGTCCAGTCAAGGACAGTGATGCCCAGGGCTCTGCCAGATGACTGTATTATTCATAATCCTGGGATTTGCACTTGTTTGTGTCCATCAAAGTTTTTGACACAGGAGAAACTTGGAGGTTGCTTTGCTACAAAAATATCTAGAggttgcaattgcaatatctttaacaTGCTGCaatccttttattttattttatattataattatatcaTTTTAACACACCTATTTAACACACCTATGCTTTTTTTAGTCAGAACTGTTACTATTACAACCTTATCAAAAATGTGTTATAATACATGTTACATAAAGCAGCTGTGTGATTTGAAGTAAGAATGCATTCCAAAGTTGAACAAcaaatttgtaaaaaataaataaacaacaaaaaaacagaaaactatAGATGATAAAGAATTATTGTACAGGGAGATATGTATAGttagaataatatatactatcAGATCCTCAGctaataaaaagtgaaaaattgtACGAAGTACAATTCCACTGAAATGTAATCCCCAGTACATTTCATTATGTCCACCTCCAACAGTAATCAGTGTTTGTGTAATGTTAATTCTTTGACCACTTAATCAATTGGTGCTTGGTAGGGAAATGCacacatggaatattgtttgtgtgtttatataagTTGTTATAGCTTTTATGCATGACTTATGCAAACCGGATTGTTGTAATGTTGTAATAGGATGAAAAACTGTAGCTATGCAATAACTAAAGTCTCAGGAGTTTACGATAATTAGCTTAACAGCTCATGTGAGTTGGTTTTGTAGGTTGGCAATTCACCAATTGAGGGTCGTTGGTGTGTCACCAGAGAAATATCAGTGGACACTGGAAAACTTGTTACTCGTCTGTGCTTTCTGTTTTCATGTCTGCACAGCTTCTGACAACTGTCTCTATGCCAGTAGGACACACAACAGCTCTGCACTTTTTATGACTGAATcgcattttactttttatttatttaaaaaaaaaaaaaaggtttagtgaagattaaattatatttattttctttgttgttAAATTTGCTGAGCAGATTGGTCAGATGAGATTGACTGGAAGTGAAAGTAATTTTACACTGAGGTGCTTATTTTGTGGATGTAAATACTTTGTCTGACACAGgtgattgaaaaaaaatgtaaatgttcctTCATTTATAAACAATATACTTCTTTGCTTAAAATTGTCAGAATATTTCTTCTGACTTGGACATTTCATGCTATTAATATAGAACTGAATTGTGTTGATCAGGTTACCATAAACAATGGAAAGACTTCaataaaaagttacatttttaGGTTTGAGTTATGAGGTTGTCAATTTACTTTCACTTTCCATGTGATGTGATGCTCATGTGAAAGAAGATGCTTAATGGACAATGCTGATGTActtaaatacaatataaattaGTATGGCATTTAGCAATATGCTGTTTTGAAGCTGTGAAACTCTTCCAAGTATTAAAAACATTGATGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209269 lncRNA downstream 62951 12779015 ~ 12781445 (-) True G154446
TU209257 lncRNA downstream 74274 12769409 ~ 12770122 (-) True G154438
TU209256 lncRNA downstream 75793 12766698 ~ 12768603 (-) True G154437
TU209226 lncRNA downstream 106933 12735503 ~ 12737463 (-) False LOC120575506
TU209206 lncRNA downstream 165286 12677493 ~ 12679110 (-) True LOC120574720
TU209357 lncRNA upstream 17827 12871558 ~ 12953388 (-) False G154515
TU209363 lncRNA upstream 20629 12874360 ~ 12931319 (-) True G154517
XR_005641887.1 lncRNA upstream 78002 12931733 ~ 12938664 (-) True LOC120574707
TU209356 lncRNA upstream 93468 12947199 ~ 12953388 (-) True G154515
TU209510 lncRNA upstream 399193 13252924 ~ 13253206 (-) True G154600
XM_039823968.1 mRNA downstream 84340 12753470 ~ 12760056 (-) True LOC120574003
XM_039823969.1 mRNA downstream 95236 12746817 ~ 12749160 (-) True LOC120574004
XM_039823970.1 mRNA downstream 95246 12746817 ~ 12749150 (-) False LOC120574004
XM_039826336.1 mRNA downstream 106913 12735444 ~ 12737483 (-) True LOC120575506
XM_039825577.1 mRNA downstream 117372 12694885 ~ 12727024 (-) True LOC120575015
XM_039825364.1 mRNA upstream 7621 12861352 ~ 12863585 (-) False si:ch211-139g16.8
XM_039825363.1 mRNA upstream 7621 12861352 ~ 12863585 (-) True si:ch211-139g16.8
XM_039825367.1 mRNA upstream 20645 12874376 ~ 12878214 (-) False LOC120574878
XM_039825366.1 mRNA upstream 20645 12874376 ~ 12878214 (-) True LOC120574878
XM_039825368.1 mRNA upstream 20649 12874380 ~ 12878214 (-) False LOC120574878
unassigned_transcript_848 other downstream 1422 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641884.1 other downstream 278925 12427504 ~ 12565471 (-) False cep112
unassigned_transcript_847 other downstream 1357471 11486854 ~ 11486925 (-) True trnaq-cug_14
TU208722 other downstream 1618850 11203450 ~ 11225546 (-) True G154033
TU208632 other downstream 1706914 11110968 ~ 11137482 (-) False tnrc6c1
XR_005641885.1 other upstream 102791 12956522 ~ 12972810 (-) False iqck
TU209391 other upstream 119601 12973332 ~ 12979685 (-) False sun1
XR_005641817.1 other upstream 481718 13335449 ~ 13421951 (-) False prkar1b
TU209766 other upstream 1197007 14050738 ~ 14057312 (-) False med9
XR_005641939.1 other upstream 1681240 14534971 ~ 14543992 (-) False LOC120574989

Expression Profile