RNA id: XM_039825829.1


Basic Information

Item Value
RNA id XM_039825829.1
length 1993
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC120575176
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14869942 ~ 14874632 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGACCTCCAGAGAAAGGAACGCTGGTCCacttattttctgttttctctAGGTGTATTTTCTGCAATCATCGTACGCAGTTTATCTTTGTCATGATATAAACAGGTCCAAGCATCCTTTAGACCTGCCTCTGACTTGTTTTGTGACGTACAGTCACAAGATGAGAACTGTTGCTCAACAGATGCTCCTGACCTGCAACAAACTTCTCTCTAGGAAAACACCAAATGATGTTATTGAGGCCCATCCATCCAACATTGAGACGGCAGCACAGATGAACAACATCCAACATTTGCCCAGCCCTCCTCATGCTCCCAGTGTGAGAGCGAGCGTTCGCCATGTGGAGGCGGTGGTGAGGGCCCACCGTAGTGGTGGATGGCTCCTGTCTGGCATCATCTGCATCAACATCCTGATCCTGGGCTGCGCTCTAGTCAGCGGCAGTGCTTTCAACATCGTGGCCATTACTGCTGAGCACAGGCAAATCTTCCTCatcattctcctcctcctcactatGTTGTGGATGCTGTTTTACGCAGTCTTCACCTCTCGAAAGGATCAAGCAGTTTTGTTCAAGGATAGCCACGCGGGGCCTGTGTGGCTCCGAGCTGGACTTCTGTTGTTTGGGTTTCTCAGTTTCCTCATCGACATCTTCAGGATTGTCACTTATGTGGGCTACCTTCACTGTGATTCTGCTGTTAACCCTCGTATTATGGTTAAAGTTGCCTTCCCTGTCGTACAAGctctgtttctgtttgtccagACATACTTCCTGTGGATTCATGCAAAGGACTGTGTGGAGCTACACACAAATTTAACGCaGTGTGGGCTTACTCTAACGCTTTCAACTAACCTGGTGGTGTGGATGACAGCAGTTACTGAGGAATCAGTTCACCAGACTAAGATACCTGATCTAAATTTCACTGTCTCACAGAAGATCTACAAAGCCAGCTATGACAAGTGTACTTGCAGCCACTCGGTGTGTGACACCTTCAAAGAAGCCTCCTACTACCTGTACCCCTTCCACATAGAATACAGCCTCTTTGCTTCGGCTATGACCTACGTCATGTGGAAAAATGTTGGTCGGGTTGTGGCCGATCACAGCCACCACAGTGTTAAATTCCGTCCAAAGGATGTGTGTTTGGGACCTGTAACAGGAATACTCCTGGTGGTGGCAGGAGTTGTAACATTCATAGTGTACGAGGTGGACATACTAACGGAGGACAAGAAGAGAAACCAAGCTCTGCGGATTCATTTTATTATGAATATAGTGATAGTGAGCCTGATGTGCCTCTCCACTGTGATTGGCTGTATCATCTACAGGCTGGACCACAGGGAACACGTATCGGAGAAAAACCCCACTCGCAGCCTGGATGTGGGGCTGCTGGTGGGAGCCTCACTGGGCCAGTTCATCATCAGCTATTTCTCGATTGTGGCTGTGGTGGCAACCGGAGCCAAAGGGTATCTGAACGGCCTCAACCTATCCTGGGCCGTGCTGATGGTGCTCCAGCTCGGCCTGCAGAACTACTTCATCATCGAAGGCCTCCATCGGGAGCCCTTCCACGTGATGCAGGAAGCAGCTCTGCACACAAACGCTCACGCCTTCCAGGAACATGACATGAGCGTTGTCCCGAAGAGCCGTAAGTCCAGGTACTTCCTGACGTCAAGCTGTGATAAGCCATGTTGGAAAAGAAGAGTACTGAAGGAAGTCTGTGCCTTTTTGCTGCTTGGTAACATtattCTGTGGATCATGCCTGCCTTCGGTGCTCGTCCCCAGTTTGATCATCCCATCGAGATACAATTCTACACATTCACAATGTGGGCGACCATTGTGAATATCGGACTTCCTTTTGGAATCTTCTACCGCATGCACTCTGTCGCCAGCCTCTTTGAGGTGTTCTTATTCTGTTAATTTTTGAGCATGGAGTGAATTTGATGATctattttattgtttaaattgaacttgttatattaaaacatttaaattcctatatattta

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04115 p53 signaling pathway
ko04914 Progesterone-mediated oocyte maturation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209980 lncRNA downstream 205271 14627750 ~ 14664671 (-) False G154948
TU209979 lncRNA downstream 205271 14662048 ~ 14664671 (-) True G154948
TU209985 lncRNA downstream 222873 14640102 ~ 14647069 (-) True G154953
TU209984 lncRNA downstream 233140 14633178 ~ 14636802 (-) True G154952
TU209938 lncRNA downstream 340823 14526134 ~ 14529119 (-) False cenpx
TU210075 lncRNA upstream 4995 14879627 ~ 14882905 (-) False ush1ga
TU210082 lncRNA upstream 20747 14895379 ~ 14895624 (-) True G155025
TU210102 lncRNA upstream 88601 14963233 ~ 14963846 (-) True G155039
TU210111 lncRNA upstream 110502 14985134 ~ 14985364 (-) True G155047
TU210145 lncRNA upstream 128424 15003056 ~ 15007022 (-) False LOC120573849
XM_039825721.1 mRNA downstream 12362 14854129 ~ 14857580 (-) False LOC120575102
XM_039825722.1 mRNA downstream 12365 14854129 ~ 14857577 (-) False LOC120575102
XM_039824441.1 mRNA downstream 41703 14795646 ~ 14828239 (-) True LOC120574214
XM_039824442.1 mRNA downstream 42553 14795646 ~ 14827389 (-) False LOC120574214
XM_039824443.1 mRNA downstream 43070 14795646 ~ 14826872 (-) False LOC120574214
XM_039823774.1 mRNA upstream 7656 14882288 ~ 14889482 (-) True ush1ga
XM_039825668.1 mRNA upstream 62336 14936968 ~ 14950077 (-) True LOC120575070
XM_039824984.1 mRNA upstream 75632 14950264 ~ 14954273 (-) True btbd17b
XM_039824989.1 mRNA upstream 89663 14964295 ~ 14969477 (-) False ccdc137
XM_039824988.1 mRNA upstream 89663 14964295 ~ 14969235 (-) True ccdc137
TU210040 other downstream 12385 14851939 ~ 14857557 (-) False LOC120575102
TU210041 other downstream 12385 14851939 ~ 14857557 (-) True LOC120575102
TU210042 other downstream 41722 14796026 ~ 14828220 (-) False LOC120574214
TU210021 other downstream 79164 14790056 ~ 14790778 (-) False LOC120574213
XR_005641939.1 other downstream 325950 14534971 ~ 14543992 (-) False LOC120574989
unassigned_transcript_852 other upstream 124141 14998773 ~ 15000144 (-) True LOC120574429
unassigned_transcript_853 other upstream 135166 15009798 ~ 15010340 (-) True LOC120573850
TU210305 other upstream 568532 15443164 ~ 15449503 (-) False metrnla
unassigned_transcript_854 other upstream 689501 15564133 ~ 15564204 (-) True trnae-cuc_25
XR_005641871.1 other upstream 843215 15717847 ~ 15724422 (-) False tecra

Expression Profile