RNA id: XM_039825840.1


Basic Information

Item Value
RNA id XM_039825840.1
length 1075
RNA type mRNA
GC content 0.37
exon number 5
gene id LOC120575183
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14529438 ~ 14532650 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGAAAAATCCCAATATACAAACCCACTCCACAGCAAGTTACTCTGTACTTGGAAGAGCGGGTTGCTAAACCTCTCCGTAATGACCTCTGATAATGGAAGTGAAGACATCTAACCCAAGAGTGTACATCAGTCTTCCAAAGAAATATGTTGCTGCTTTTGCTGAAAATTATGAACTGGACCATTGGTTGGTTATAAAAGAGCTGAACCCCTATGTAACTGAAAGATATGTACGAGCTTACTTTCGAGAATGGGGCACTGTCACAGCATGTAAGATTAAGATGCGCCCCAACTTGGAGGGAAAGAAGGCACTGGCGTATGTGAGGTTTTCTACAGCGGATGAAGCGGACAGAGCAGAATGGGCTGGTCCTCATTACATTGGAGGCGATGTGGAAGTAAAACAAGTTGTTAGTCCAAAGATGGAGGATTCAGATGAGGAGGTCACCGCAGGCGTTGCTACAACTCAACCACGCCGTTCAATGGGCTTGGGCTACATCCTGGAAGATGCTCAGTGGTTATGATGAGTTGGACAGTTAAAGAAATACCGTGCAACTTTATCTTTAAGTTTAAAATCATATATGTATGTTTGAATTCATTTAGAGATTGTAAACTAACGTGGCTCAGAAAAATCAACGTGGCTGCAGTGAAATATTCTGtaaacacaaagacaaaaaacactgatataaataaagcagcaaatcctcagcAAGGCCTAAGTAAGAACACCTGTCCTACACCTATGGATATTTGTTTATCTGTTTAGCTGAGTTGATgtgatatatattttattttgctgatTCTATGTTGTGTCTTATGATTGTCTACCTTGGGTGGATAATAACATTGTATTCtatgtgtttaatgtttgtctAGAACATAGTGGTGTTAAAATATAGATTATGTTAACTCCCTTTGTGCAGCCACTGTTGATGAATGCAATATGATTATCAATTTATAAATGATATGACACTGCTATACCCATCTATAATTGCCTAAAGAGATGTAGCTATATCACATAATCTAACAAatcctaaaaaataaaaataacattaaaaaataaaaatgaataaaacattg

Function

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209938 lncRNA downstream 319 14526134 ~ 14529119 (-) False cenpx
TU209899 lncRNA downstream 72402 14455062 ~ 14457036 (-) False LOC120574967
XR_005641944.1 lncRNA downstream 192364 14330945 ~ 14337074 (-) True LOC120575037
TU209820 lncRNA downstream 202502 14325973 ~ 14326936 (-) True G154825
TU209781 lncRNA downstream 430157 14078514 ~ 14099281 (-) True G154788
TU209980 lncRNA upstream 95100 14627750 ~ 14664671 (-) False G154948
TU209984 lncRNA upstream 100528 14633178 ~ 14636802 (-) True G154952
TU209985 lncRNA upstream 107452 14640102 ~ 14647069 (-) True G154953
TU209979 lncRNA upstream 129398 14662048 ~ 14664671 (-) True G154948
TU210075 lncRNA upstream 346977 14879627 ~ 14882905 (-) False ush1ga
XM_039823675.1 mRNA downstream 285 14526126 ~ 14529153 (-) False cenpx
XM_039823674.1 mRNA downstream 430 14526126 ~ 14529008 (-) True cenpx
XM_039826292.1 mRNA downstream 40515 14481337 ~ 14488923 (-) True notum1a
XM_039826293.1 mRNA downstream 50064 14476834 ~ 14479374 (-) True LOC120575481
XM_039826079.1 mRNA downstream 53648 14472095 ~ 14475790 (-) True pycr1a
XM_039825540.1 mRNA upstream 1032 14533682 ~ 14543994 (-) False LOC120574989
XM_039825541.1 mRNA upstream 1032 14533682 ~ 14543993 (-) False LOC120574989
XM_039825539.1 mRNA upstream 1032 14533682 ~ 14543990 (-) True LOC120574989
XM_039825542.1 mRNA upstream 2630 14535280 ~ 14543993 (-) False LOC120574989
XM_039825543.1 mRNA upstream 3577 14536227 ~ 14543993 (-) False LOC120574989
TU209766 other downstream 472126 14050738 ~ 14057312 (-) False med9
XR_005641817.1 other downstream 1107487 13335449 ~ 13421951 (-) False prkar1b
TU209391 other downstream 1549753 12973332 ~ 12979685 (-) False sun1
XR_005641885.1 other downstream 1556628 12956522 ~ 12972810 (-) False iqck
unassigned_transcript_848 other downstream 1686464 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641939.1 other upstream 2321 14534971 ~ 14543992 (-) False LOC120574989
TU210021 other upstream 257406 14790056 ~ 14790778 (-) False LOC120574213
TU210042 other upstream 263376 14796026 ~ 14828220 (-) False LOC120574214
TU210040 other upstream 319289 14851939 ~ 14857557 (-) False LOC120575102
TU210041 other upstream 319289 14851939 ~ 14857557 (-) True LOC120575102

Expression Profile