RNA id: XM_039825884.1


Basic Information

Item Value
RNA id XM_039825884.1
length 4912
RNA type mRNA
GC content 0.48
exon number 35
gene id dnmt1
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 16643191 ~ 16655959 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTGCTTATAGCATCCATTGCAAGGAACAGCACGCAACAGGCACTCACAGTGGAGCAGCGTTGTAGTTACCAGCGGACGGTTTAAACATTGTTTTAACAGATTTTAAAGCAGTTTTATCTATTTTATCTCACGCTTTTAGCTAGCTGTTTACCATGCCATCCAGGACTTCCATGTCTCTGCCAGAGGATGTCAGGAAAAGGCTGCAGGTGCTGGATGAGGATGGGATTTCAGACGAGGATAATGTGAAAGAGAAGCTGAAGTTGGTGCAGGACTTTCTGCATGTAGATGCTCAGGACCAGCTGTCCAGcctggaagaaaagaagaaaaattcaGAGATCTCAATGGAGGTCTACATCTCTAAAGTAAAGACTTTGCTTGGAAAAGAGCTTCATCTTGAAAATGGTTCACATGTTGATGGTGTGGAGCAGAATGGAAAGACTGGCTTCATAAATGGTTCCCACAAAGATAAGAACAGTGAAGATGTAACCATGGATgtacaggaggaagaggaggctgtcaAGTCACCAACTGCTTCCAAAGGGAAGGGTGGACGCAAGAGCAAGGCAAATTCTGACCCTAAAAaGTCTCCAGCCAGTACCAGGGTTACAAGAAATGCTGGAAAACAGCCAACCATCATGTCAATGTTCTCTAAAGTTCAAAAGCGCAAGTCTGAAGACTTGAATGGAGAAGCTACTAATGGACAAAATGAAGTGAAGGAAGATGATgttgaggagTCTCGGGAGGAAAAGCGTCTTAAAGTGGAATCAGATGAAAGTACAACTCCAGAGAAATCGAGTGAGATCACTAAACCGGTTTCTGCTGTAAAGacACCACCCCTCAAATGTACAGACTGCAGACAATACTTGGATGACTCTGATCTCAAATTCTTTCAAGGGGATCCTGATAATGCGCTGGATGAACCAGAAATGTTAACCGATGAGCGTCTCTCCCTGTTTGACTCGAATGAGGATGGATTTGAGAGCTATGAGGATCTGCCTCAGCACAAGATTACAAACTTCAGCGTGTATGACAAGCGTGGCCACCTTTGTCCATTTGACTCTGGACTGATTGAGAAGAACGTGGAGCTCTATTTCAGCTGTGTTGTGAAACCAATCTATGATGACAACCCTTGCTTGGATGgtGGTGTTCCTGCCAAGAAGCTTGGGCCCATTAATGCCTGGTGGATCACTGGTTTTGATGGTGGAGAAAAGGCTTTAATTGGTTTCACTACAGCTTTTGCCGATTACATCCTGATGCAGTCCAGCGAGGAATATGCACCCATttttgcagtaatgcaggaGAAGATCTATATGAGCAAGATTGTGGTGGAGTATCTCCAGAAGAATCCTGATTCTAGTTATGAGGACCTTCTCAACAAGATTGAGACAACCGTGCCTCCTGCAGGGCTAAACTTCAACTGCTTCACCGAGGACACACTGCTGCGCCATGCCCAGTTTGTGGTGGAGCAGGTGGAGAGCTACGATGAGGCCGGTGACTCAGATGAGCAGCCCATCATTGTTACTCCCTGCATGAGAGACCTGATCAAGCTTGCAGGCGTCACACTAGGGAAAAGCATGCTGCTGTACTGGAGAGCTGCCAGAAGACAGGCCATTCGTCACCCAACAAAGATTGAGAAGGACAAGGGACCAACTAAAGCGACCACTACCACACTGGTCTACCAGATCTTTGATACCTTTTTCTCTGATCAGATAGAGCAGAATGATAAAGAGAGTGGTGCGGCCAAAAGGCAGCGCTGTGGTGTCTGTGAGgTTTGCCAATCACCTGATTGTGGCAAGTGTGCAGCTTGCAAGGACATGATCAAATTTGGGGGAAGTGGCAAAAGCAAGCAGGCTTGCAAGCAGAGAAGATGCCCAAACCTTGCTGTAAAGGAGGCTGAAGATGATGAGATTGTTGAAGAGGAAGATGTTCCAGTGGAGAAGCCCAAAAAGCTTTCTCATGCTAAGAGGAAGAAGCAGGCACAGTGCAAACTGACATGGATCGGAGAGCCTGTTCAGACTGAGGGGAAGAAGCAGTACTACGGCAAGGTCCGTGTGAATGATGAAGTGCTAGAGGTGGGCGACTGTGTATCGGTTTCCTCAGAGGATCCAACCATGCCTCTGTTTCTGGCGAGGATCACATCACTGTGGGAAGACAACAATGGAAAGATGTTCCATGCCCACTGGTTCCTTCGTGGTGCTTACACAGTGCTGGGCGAGTCTTCTGATCCGCTGGAGCTCGTCCTTGTGGATGAGTGTGAAGACATGCAGCTCAATTATGTGCAAGGCAAAGTTGACGTCATGTATAAGGCCCCATCTGACAACTGGTTTATGGAGGGGGGCATGGATTCAGAAATCAAGGTGATTGAGGATGACGGGAAGAGTTTTTTCTATCAGTTCTGGTACGACACAGAATATGCCCGCTTTGAGACACCTCCCAAGACCACTCCATTAGAAGAGAGCAAGTTTAAGTTCTGTTGCAGCTGTGCTAGGACCAAAGCGAGAGAGGAACAGGAAATGCCTCGTGCATTTGAACCTCTATTGGACAAAGACCATGACTCCAAGGTTCTGTATGCGCTGGCCCGTTTTAAGGGGGAGCAGTTCAAGGTGGGAGACAGTGTCTACCTGCATCCTGACACTTTTAATTTCAGTGTGAAGCCAGCTAGTCCAGTGAAGCGCTCTCATCGGAAAGAGGATGTGGATGAAGACTTGTATCCAGAATATTACAGGAAGTCTTCAGACTATATCAAGGGGTCTAACCTGCATGCTCCAGAACCCTTCCGCATCGGGCGCATCAAGGAGATCTTCTGTCACAGACGTAGCAACGGAAAACCCGACGTGTCAGAGGTCAAACTGCGACTCTGCAAGTTCTACAGGCCTGAGAACACTCACAAAGGTGTCAAAGCCAGTTACCACACAGACATCAATCAGCTATACTGGAGTGATGAAGAAGTGACTGTCAGCATGACTGAGGTGCTTGGCCGCTGTCAAGTAGAATATGCAGAAGACCTAAATGAATCAGTCCAGGACTATTCCAGTGGTGGACCTGACCGCTTCTATTTCCTGGAGGCCTATAATGCAAAATCCAAAAGCTTTGAAGACCCTCCTAATCATGCTCGCTCTGCTGTTCATAAAGGCAAAGGAAAGGGCAAAGGGAAAGGTAAAGGCAAAGGGAAGGCTGCACAGGAACCACAGGACTCTCAGAATGAACCACAGACACTTAAAGTGCCCAAATATCGCACACTGGATGTGTTCTCTGGCTGCGGTGGGCTTTCTGAAGGCTTCCACCAGGCTGGTATATCTGAGACTCTGTGGGCCATAGAGATGTGGGAGCCTGCAGCACAGGCCTTTAGGCTCAACAACCCTGGCACCACAGTGTTCACGGAGGACTGCAACGTCTTGCTGAAGTTGGTCATGTCTGGAGAGAAGACAAATTCTCTGGGCCAGAGGCTTCCTCAGAAGGGTGATGTAGAGATGCTGTGTGGAGGACCTCCTTGCCAAGGGTTCAGTGGGATGAACCGCTTCAACTCTCGCACTTATTCCAAATTCAAGAACTCACTCGTGGTCTCCTATCTCAGTTACTGTGACTACTACAGACCCAAGTTTTTCCTGCTTGAGAATGTGAGGAACTTTGTTTCATTCAAAAGCTCCATGGTTCTGAAGCTGACTCTACGCTGTCTTGTGCGCATGGGCTACCAGTGTACCTTTGGTGTCCTTCAGGCTGGTCAGTATGGTGTTGCCCAGACCCGCCGCAGGGCAATCATCCTGGCTGCTGCTCCTGGAGAGAAGCTGCCTCGCTACCCGGAGCCTCTGCATGTGTTTGCTCCCAGAGCTTGTTCTCTGAACGTGGTGGTTGACGAAAAGAAATACGTCAGTAATGTCACACGAGGTAATGGAGGAATCTACAGAACCATCACTGTCAGGGACACAATGTCTGACCTGCCAGAGATTCGCAATGGTGCAGCTGCGTTGGAGATTTCCTACAACGGGGAGCCTCAGTCTTGGTTCCAGAGGCAGATCAGAGGCACACAGTATCAGCCAATCCTCAGAGATCATATATGCAAGGACATGAGTGCTCTGGTTGAAGGTCGGATGCGTCACATCCCCTTGGCTCCAGGCTCCGACTGGAGGGATCTGCCCAACATTGAAGTTCGGCTGAAAGATGGCACCATGACAAAGAAGCTGCGTTACTCACACCCTGATAAAAAGAGTGGTCGCAGTGGCACCGGTGCACTCAGAGGTGTTTGCACTTGTGCAGGAGgGAATCCATGCGACCCTGCAGACAGGCAGTTTAACACCCTGATCCCCTGGTGTCTGCCCCACACTGGGAACCGCCATAATCACTGGGCTGGACTCTACGGCAGATTGGAATGGGACGGCTTCTTCAGCACAACTGTCACCAACCCTGAACCCATGGGCAAGCAGGGCCGTGTTCTGCATCCTGAGCAGCACAGAGTGGTCAGTGTGAGGGAGTGTGCACGCTCTCAGGGATTCCCCGACACCTACCGCTTCTTTGGAAACGTCctggacaaacacagacagGTTGGAAATGCAGTGCCCCCTCCACTCTCCAGGGCCATAGGCCTGGAGCTTAAGAAGTGTGTCATAGAGAGAATGAAGGAAGAACAGGCATCAGAGACTGTCAAACAAGAGATGGAGGTCTCTGATTAGACCCTTCCCAGCAAGAATCAGTTCCACAGTTCCTGATGCCTACATGTCGCTatcatttcttttaaatacGCTTGCTTTTAACGGTCACGAAGTGGCCACCATGGACATTGTGTGCAGTGccattcaatgtttttgtttcaatGTGCTTTTTAATCATGTTGTTGAAATGTTCACCTCATGTGGGATAAATTGTATGTAGTTtttatatgtgtaatatttCAAATAAAACTTATGAAATTGATAA

Function

GO:

id name namespace
GO:0090116 C-5 methylation of cytosine biological_process
GO:0005634 nucleus cellular_component
GO:0003886 DNA (cytosine-5-)-methyltransferase activity molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K00558 DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210880 lncRNA downstream 19911 16621866 ~ 16623280 (-) False angptl6
TU210807 lncRNA downstream 276339 16366002 ~ 16366852 (-) True G155532
TU210786 lncRNA downstream 342430 16300547 ~ 16300761 (-) True G155512
TU210781 lncRNA downstream 361623 16280383 ~ 16281568 (-) True G155508
TU210780 lncRNA downstream 362967 16279491 ~ 16280224 (-) True G155507
TU210927 lncRNA upstream 48576 16704535 ~ 16725040 (-) True G155619
TU210945 lncRNA upstream 76382 16732341 ~ 16733171 (-) True G155637
TU210956 lncRNA upstream 85453 16741412 ~ 16742961 (-) True G155644
TU210976 lncRNA upstream 111474 16767433 ~ 16769938 (-) True G155659
TU211027 lncRNA upstream 178407 16834366 ~ 16836389 (-) True G155693
XM_039826221.1 mRNA downstream 16458 16621826 ~ 16626733 (-) False angptl6
XM_039826222.1 mRNA downstream 16458 16621826 ~ 16626733 (-) True angptl6
XM_039826220.1 mRNA downstream 21489 16616403 ~ 16621702 (-) True icam5
XM_039825271.1 mRNA downstream 27335 16599258 ~ 16615856 (-) True trip10a
XM_039825838.1 mRNA downstream 203350 16433623 ~ 16439841 (-) True rdh8a
XM_039825886.1 mRNA upstream 1956 16657915 ~ 16676439 (-) True s1pr2
XM_039826143.1 mRNA upstream 184473 16840432 ~ 16856848 (-) False elavl3
XM_039826146.1 mRNA upstream 184473 16840432 ~ 16856846 (-) False elavl3
XM_039826135.1 mRNA upstream 184473 16840432 ~ 16856846 (-) True elavl3
XM_039826144.1 mRNA upstream 184473 16840432 ~ 16856845 (-) False elavl3
TU210878 other downstream 1060 16569446 ~ 16642131 (-) True G155583
TU210768 other downstream 384166 16230784 ~ 16259025 (-) False LOC120574432
TU210769 other downstream 397860 16230784 ~ 16245331 (-) False LOC120574432
TU210689 other downstream 487164 16153851 ~ 16156027 (-) False LOC120574545
TU211128 other upstream 377090 17033049 ~ 17035018 (-) False polr3k
TU211291 other upstream 759566 17415525 ~ 17415841 (-) True G155888
unassigned_transcript_855 other upstream 1090627 17746586 ~ 17746657 (-) True trnat-cgu
TU211468 other upstream 1364052 18020011 ~ 18022964 (-) False psmg3
XR_005642010.1 other upstream 1696802 18352761 ~ 18352844 (-) True LOC120575519

Expression Profile