RNA id: XM_039825982.1


Basic Information

Item Value
RNA id XM_039825982.1
length 2879
RNA type mRNA
GC content 0.45
exon number 7
gene id st8sia6
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 20102040 ~ 20113445 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACACAAGGAGCTTTGGGACAACAGGGGAAAGTAGGATTGTGAGTTTGTCTGTGTGAACACATGAAAAAAGTGGAAAGAAGATAGGTGGATCAAAGAGACATGGCAATGATTAAAGTAGGATGTGGAGCAACAAAAGATCGGCTTTGTCACAGCTGACTTGGACACAAACGAGAAGAGAGGAACAACCAAGTAGAGGTGCAAAGAAGACCAAGGACTTGCCTGAACAAGACGGGCTAATACCTTAGGTAGCATGCTCTCATTCAcccaaggagagagagaaacactgaGTCAaaccagacagagagagagacagacagacaggaagagcgAGGGGGAGGAGTATGAGGAGGGAGTGAAGTAACAGAAAACATAAGAAAGCAGAGAGGCAAAAGATTAACACTcttgagagagtgtgtgtgaggttgAGCAAGGGAGAACGAGCCGAAgaaggcgggggggggggatctgAAAACAGAGAGAGGGTGACAGAAAGTAGAAAATGGGTGAGTGTTGTTGAGCCAGCTAAAGCAGATAGGAAGACAGAAAGTGAGGGGCCTAGCGGGTGAAGTTAGCAGGAGGGGAGAGGTATGAGGGGACAGCTCTTGAAGTCATTCTTCTCTTTGGTGATCACTCTCTTCTGTTTGGGGAGCCtgctgaccactttcatctggtaCATGGTCGACAACAATAATGTTGAACCTCAGAGGCTGCCTCCTCAAAAGAAAAGTGCCCCCCAGCCCTCTGACCCCTGTAAAGGCTGCAGGGAGGTCATCAACAAAGTAATAGAGCGTTACTCCAAACCCTGGAAGAAGCAGGAGGACAATTACCAAAAGTTCAGATCTCAGCTGAGCAGCAAGTGCCATGGTTTTGACAAGGCCATCATAACCCAGGCCAACACTCCAGTGGGATCAAAGCTTGTGTATGacggagaaaagaggaggaccCTCCAGGTCACCCCAGAGATTTTCAGCACTTTTGCAAAGGAGCATCCGTTCCCAAATAAAACATGGGACACGTGTGCTGTTGTTGGGAATGGAGGGATCCTGACCAACAGCAGCTGTGGAAAGATGATTGATTCCGCTCAATTTGTTATCAGGTGCAACCTACCTCCTTTGGAAAAAAGCTATGAGAAACATGTGGGCATCAAGACAGACCTTGTGACAGCAAACCCAAGCATCTTCATAGAGAAGTATGGGGCTCTAATGGGACGTCGTCGTCCATTCGTGGAGAGTCTGCATAGCTACGGCAACTCCTTGCTGCTCCTTCCCGCCTTCTCCTATGGCCACAACACTCCTGTGTGCATGCGGGCTGTCTACAGCATTGAGGACTTTGAAAGCCCCACCAGGGCCATCTTTTTCAACCCTGAGTACCTCCAGAGTCTGGCCCTCTTCTGGCGCTCCCAAGGCCTACGAGCAGTGCGGCTCAGCACTGGCATAATCATGGCCAGCCTGGCGCTGGAACACTGTGCCAACGTGCATCTGTACGGGTTCTGGCCCTTCAGTAATCACCCACATGGACTCTATGCCCTGACTAACCACTACTACGATGACAGACAAACTAAAACGAAATTCCACGCCATGCCGGCTGAGTTTGACCTCTTGTTGCGGCTGCACAGTCAGGGGGTGCTCAGGCTTCACCTGGGAGATTGTTGACCAGCTGAAAAGTAGTTCCCAGACCCAGGGGCATCTGACAGCATAGGAGCAAAGTGCCTTGTTTGTAGCCCAGTCGCTCGTGAAGTCCTTCATATACTTTTGAATGAATGGACAGATACATTTTGGCTGATGACACAGATTAAGTGTGTCCAAGCAAGGTGAATGTTTGGACTTGGAGTGAATGCTGAGTTGGCCCATCAGGAGCCAAGACATTTGCACTGAAATAAAGATGCAACAATCATAAGGCTTACAGTGTATctaaaattgtatttattttgtttcagcTGGAGCCTGGATGCAGGTATTTTGATTTCTAAGGGAATCCTTTGTACAAGTCGAAAATATAGTGCCTTGTTTTGGATCAAACTGAATGTATTTTGAAGAAAATCAAATACCTCCTTTACATGAACATTGTCTGGCTAAACACTTTAACGTTTAATGAAAACTGCCACACTCTGAATGTAAAGAATCTTTTGATATTTGTTGGAAACTCTCATGTGGAAATGTATGATACTTACACATTAATCAGACAATTGTTATAAAAGGCTGGTGCTGGACACGAGGTAAGCCTCAGATCTCAGAGTGCCTGCAGGTGTTGTGTCCCAGTAGCCTCAACTACAAATCATCATTGCTTCCCTCTGCCGGCTGTGGTCAACAGATGACCCTATTAAGTGAAGCTCGGAGCCAGGGACTAAACAGAGACAACACAGAAAGAAACAAGAATAATAACACTACTAAACACGGGAGGTCCCTCCTCACAAAGGTTGCTATGGTGAATCAGTGTTACAATGTGCTACCCCTTGTCACCACAGTGACCAGAGGTGGATATGTACTGTAAGTGGAAACATTCACATATTGGTACAATGTTAGGTTGGAAACAAGTTCTTTTTAAGTTgatgtaaatgctaaatcaaTGACTGACTCCAATGTAAGGTAATGTAAGGATTGTGAATTGAGCACTTTGATTGAAAATTGTAACCTTTGGGTAAGAAGTAACATTTGCATCAAGACTTGTGCAACTGGGAGTAATGCCTTACATGCTGATACTTATAAAGTCTTAACCGTAATTTTTTTGTCATCCAGAACAATAATGTACAAGCTGTAGATGACCAAACTTGAGAAATCTTTGTGAGCCAGTTTTagaatgtttttgtttagtGAACAGCATGAGGTAAGAGGGACAATGAAGTTAAAGTGAATCAGTGAATAAATATTTAACACAAACCA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG:

id description
K06615 SIAT8F; alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8F)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212254 lncRNA downstream 129537 19968932 ~ 19972503 (-) True G156595
TU212210 lncRNA downstream 149058 19950391 ~ 19952982 (-) True G156567
TU212204 lncRNA downstream 160148 19936277 ~ 19941892 (-) True G156562
TU212200 lncRNA downstream 165484 19932662 ~ 19936556 (-) False G156562
TU212139 lncRNA downstream 392732 19707030 ~ 19709308 (-) True G156510
TU212314 lncRNA upstream 60053 20173498 ~ 20174463 (-) True G156631
TU212318 lncRNA upstream 73691 20187136 ~ 20187694 (-) True G156635
TU212331 lncRNA upstream 90066 20203511 ~ 20214927 (-) True G156645
TU212344 lncRNA upstream 128810 20242255 ~ 20242586 (-) True G156658
TU212359 lncRNA upstream 185616 20299061 ~ 20300934 (-) False hexim1
XM_039825965.1 mRNA downstream 23023 20047157 ~ 20079017 (-) True LOC120575253
XM_039823886.1 mRNA downstream 154119 19941967 ~ 19947921 (-) False si:busm1-163l24.3
XM_039823885.1 mRNA downstream 154119 19941967 ~ 19947921 (-) True si:busm1-163l24.3
XM_039823888.1 mRNA downstream 201515 19867061 ~ 19900525 (-) True rnd2
XM_039824016.1 mRNA downstream 353059 19747311 ~ 19748981 (-) True rprml
XM_039825826.1 mRNA upstream 8991 20122436 ~ 20125969 (-) True rpl19
XM_039824001.1 mRNA upstream 185579 20299024 ~ 20300946 (-) True hexim1
XM_039824781.1 mRNA upstream 264656 20378101 ~ 20384616 (-) True tmem98
XM_039824782.1 mRNA upstream 264656 20378101 ~ 20382513 (-) False tmem98
XM_039824562.1 mRNA upstream 368054 20481499 ~ 20496994 (-) True kcnj19a
unassigned_transcript_859 other downstream 81752 20020217 ~ 20020288 (-) True trnac-gca_26
TU212205 other downstream 154150 19945588 ~ 19947890 (-) False si:busm1-163l24.3
TU212206 other downstream 154150 19945588 ~ 19947890 (-) False si:busm1-163l24.3
TU211982 other downstream 850784 19249726 ~ 19251256 (-) True G156396
TU211888 other downstream 981108 19108899 ~ 19120932 (-) True G156321
unassigned_transcript_860 other upstream 57842 20171287 ~ 20171358 (-) True trnac-gca_27
TU212545 other upstream 955581 21069026 ~ 21071488 (-) False atxn7l3a
TU212733 other upstream 1349777 21463222 ~ 21465073 (-) False ndufa4a
unassigned_transcript_864 other upstream 1490920 21604365 ~ 21604436 (-) True trnac-gca_31
TU212812 other upstream 1507585 21621030 ~ 21622961 (-) True G157034

Expression Profile