Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006871 |
| length | 640 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 4 |
| gene id | XLOC_003508 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 27968834 ~ 28010171 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0009612 | response to mechanical stimulus | biological_process |
| GO:0016311 | dephosphorylation | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0016791 | phosphatase activity | molecular_function |
| GO:0004035 | alkaline phosphatase activity | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040420-1 | Predicted to enable alkaline phosphatase activity. Acts upstream of or within response to mechanical stimulus. Predicted to be located in membrane. Predicted to be anchored component of membrane and integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including anterior neural keel; bone element; central nervous system; gut; and vasculature. Human ortholog(s) of this gene implicated in adult hypophosphatasia; childhood hypophosphatasia; hypophosphatasia; and infantile hypophosphatasia. Orthologous to human ALPL (alkaline phosphatase, biomineralization associated). |
| ensembl_id | ENSDART00000135135 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006868 | lncRNA | upstream | 228773 | 27738489 ~ 27744282 (+) | True | XLOC_003507 |
| TCONS_00008623 | lncRNA | upstream | 241880 | 27729240 ~ 27731175 (+) | True | XLOC_003506 |
| TCONS_00008403 | lncRNA | upstream | 323473 | 27625084 ~ 27649582 (+) | False | XLOC_003505 |
| TCONS_00008624 | lncRNA | downstream | 429380 | 28418774 ~ 28424314 (+) | True | XLOC_003510 |
| TCONS_00006877 | lncRNA | downstream | 452979 | 28442373 ~ 28446862 (+) | False | XLOC_003511 |
| TCONS_00006878 | lncRNA | downstream | 452979 | 28442373 ~ 28447433 (+) | False | XLOC_003511 |
| TCONS_00008625 | lncRNA | downstream | 456919 | 28446313 ~ 28447071 (+) | True | XLOC_003511 |
| TCONS_00006880 | lncRNA | downstream | 528168 | 28517562 ~ 28519901 (+) | False | XLOC_003513 |
| TCONS_00006866 | mRNA | upstream | 427336 | 27543093 ~ 27545719 (+) | True | XLOC_003504 |
| TCONS_00006858 | mRNA | upstream | 589323 | 27274355 ~ 27383732 (+) | False | XLOC_003500 |
| TCONS_00006872 | mRNA | downstream | 118238 | 28107632 ~ 28126139 (+) | False | XLOC_003509 |
| TCONS_00006873 | mRNA | downstream | 120009 | 28109403 ~ 28122454 (+) | True | XLOC_003509 |
| TCONS_00006874 | mRNA | downstream | 176771 | 28166165 ~ 28418985 (+) | False | XLOC_003510 |
| TCONS_00006875 | mRNA | downstream | 176771 | 28166165 ~ 28421094 (+) | False | XLOC_003510 |
| TCONS_00006876 | mRNA | downstream | 228747 | 28218141 ~ 28424186 (+) | False | XLOC_003510 |
| TCONS_00006865 | other | upstream | 452482 | 27520456 ~ 27520573 (+) | True | XLOC_003503 |
| TCONS_00006853 | other | upstream | 1358468 | 26604611 ~ 26614587 (+) | False | XLOC_003495 |
| TCONS_00006838 | other | upstream | 1894994 | 26077947 ~ 26078061 (+) | True | XLOC_003488 |
| TCONS_00006817 | other | upstream | 2490085 | 25481107 ~ 25482970 (+) | False | XLOC_003476 |
| TCONS_00006814 | other | upstream | 2494637 | 25477743 ~ 25478418 (+) | True | XLOC_003475 |
| TCONS_00006890 | other | downstream | 1362707 | 29352101 ~ 29352221 (+) | True | XLOC_003521 |
| TCONS_00006893 | other | downstream | 1577353 | 29566747 ~ 29571528 (+) | True | XLOC_003523 |
| TCONS_00006949 | other | downstream | 2982640 | 30972034 ~ 30997832 (+) | False | XLOC_003549 |
| TCONS_00006950 | other | downstream | 2985377 | 30974771 ~ 30974892 (+) | True | XLOC_003550 |
| TCONS_00006952 | other | downstream | 3026125 | 31015519 ~ 31024572 (+) | True | XLOC_003549 |
