RNA id: XM_039826069.1


Basic Information

Item Value
RNA id XM_039826069.1
length 4189
RNA type mRNA
GC content 0.52
exon number 23
gene id LOC120575348
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5416137 ~ 5437363 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCGCTATCAAACAGTGGTTAGGAAAGACCAGGGTTGCCACTATTTGTTATAAATCGACCTGTGATTAGGGATGTATGATACAACAGTCAGCTAATCGCATTCAGTTGTATGGCAGGGAAACAGTAGTGCACAGAATCCCCATGGTTACCACGCATCGATCACGGTGTGTACGCGCCGGGAATGGTGCCTGACAGACTGTACTCAGGGCTACTAAAGCTGTGGGTTCATTAAAGGGCCAGTGTGGAGGTTTGCAGCTGGCTCAGTACTGGGGCTTCTGGGAATCGAAACTTATCTGGGGCTGAAGTCAGACACGAGCATCGACGGGTCCCTTCCTCCTCGGCTCGCTGTTTATCAGCGTCAGCTCGGCCTCTCGTCTGCTTTAAGTGTCTGCGTCTCCTCCCCGCCTTGGACACTAAATGACACGCGTTTAAACTTTTCGTCGGTTCAGTGAACTTCCTCACTTCATTGGGTAGGTGCGCCTGAAGTTGGCCCTCTCGCGCCACGAAAGCCAAGGGAAAACAAGCGGGGTCAGGGGGCTTTGCATGCTGGATGTATTTAATACTGAATTAACACGAACACAGGCTCGGCGACATGCTCGGCGAGTGTCTTTGCACGGGCTGACAAAGGAAACAAGCATGGACCCTGCCAGACAGAAGCGCAAGGAGGAGATAAGCAAATCTCTGACATTTATACAgtcttccCTGGCTTATCCAGAGCCCGAGGGCTACCAGGACTTCCTGACCCGGTTAGTGTGCAACCTGCTCGATGAGGGGAACGCCTCGTTCAAAGACAGAGACTGGGAGCAGGCGGTGAGAGAGTTCAGTGAAGGCTTGAATGTCTCATGCTACgctgcagcagaggagatcCAGATCCCTGAAGCTTTGCTGGAGAGCCTCTATGTCAACCGGGCTGCTGCCTACCACAGTATGGGGGAATACGATCAGGGCGTGAAGGACTGCGACGGAGCTCTGAAAGTATGTAAGGACAGCCGCAGGGCGCTGTACAGGAAGGCTCTTTGTTTGAAGGAGCTCGGGAAGTTCAAGGAGGCCTACAACTGCACAACGGACTGCCTGCTCATCACTCGTCTGGTAAAGGACAAACAGGTGAATGAGCTCGCACAGGAGCTGGCCATCCATCTGGGACTCAAAAATCGAAAACCCTATGTCAGCACAAAGGACCGCTCACTTATCACGAGAGGTGTCACAAATGGAAACATGACTGCTGAAGCCATCAAGGTGTCTGGTGCTCATGTAGGAAATGGTATGAATCCTCTGAGTGGCCTGGCACCAGTCAGCTTTCCCAGCATGCCTCAGTCCCCCATTCCCTCGCCCGCTCCCAGCTGCCTCCAGCCTGCTGTCTCCCCAGCACCTAACATGGTGGACACTTTGGACGACTGCGAGCGGTTGGGAGATGACTTGGACAGCCTGCTCGACTGCTTCCCCGATGATCAGGAGCCAACTGAGGCAGCATTCTCAGACCCCAGCAGGACATCCACCTGCGAGCACACAGTTCCTTCGGTCCTGCCCGCCCCAACGCCCCAGCTGCCCCCGGCCTTCTTCAGCTCGGCCGTCAGCCACCTCAACTCCCTGGACTCCTTTTCAGGTGGTGGGTGCAGCACCACAGCTGTGACACTGGATGCTCTAGACGATCTCCTGACCTCTGGAAGTGGAGGTGGCGCGGGCACTTCAAACCTAGCACTGACCTCCGTGGCGCTGAATACTCTGGATGGCCTTGATGCTCTGGATAGCCTTGATGCTCTGGATAGCCTTGATCCTTTGGGTGGCCTTGATGCTTTGGGTGGCCTTGATCCTTTGGGTGGCCTTGATGCTTTGGGTGGCCTTGATGCTCTGGATGGCTTATTGGATACGACTccagttgctgctgctgctgggaatgAGTCCAAAACAGAACTGGACGAAGGGGAGAAGTCCCTTGACGATTTGCTAGATGAAATAGATCCCCTGGAGGCCGTCTCTGATCCAGGTGGTCCGAGTGGTGAAGTCCCCAACGCTGGTGTGATATCTGTGGACCCGCTCAACGTCCTTGATGCCCTGGACTCGTTTCCCTCAGTGGAAGGTGTTGTGGCAGCTTTGCCAGCAATCTCCATCGGGGGAACAGGCCTGGACTCGCTCTCCAGTTTCAGCTCACCTGGTATCGCAAGCTCTCTTACTGCTGCAGCTCCAGTTATGCGATCTCCAAAGAAGAACTACAAAGAGAAGAATAACCAAGCGCTGGGGGCAGTTTCTAACCCGTTGTCCTCCACTCATGAGTTCCTGCAGGCCTGCTCTGCCTGTTTCCCTCGGAAAGGTAAAGGCATATATACGTATGTTCACAAGCCAGACCTGGTCCACAGCTGTGAGCGAGACATTCTGTTATGCAGACTAAAGGCAGGCTATCCTTCGGAGTGGACCCGAGTGCGACAGATGCCTACCTGGACTTCCTTCAGTGGGCCGTTTGTACTTTGCAGGGAGCTGCTGAAGTCCGGGGATGTGGGCCTGTGTAAATACGGAGAGCAGTGCACGTTTGCCTACAACCAGCTGGAGATCGACGTTTGGACGGAAGAGAGGAAGGGGACGCTGGACAGAAACCTGCTGTTTGAATCCTCCGTTTTCCAACTGGACCCTGTAAACAGCATCATCCGCATCATGCAGGAGAACAAGGGCATGTTCATTTCCCTCTGTCAGGAATGCTATGACAGTAAACCTAGAATCATCAGTAAACGTTGTAGAGACAATCACACCATCTGCTCTAACTCGGATGCTCGCCACCCCTTCGATGCCAATAAGTGCTTGGCATTTGTGGTGAGGACCCACAGTGTGAACTACAGAAAGGTCCGACCGCTGGGCGTCCTGTGCCACTTGGATCTGTGCCGGCCAGCCATCCGTTACGGCTGCCAGAGAGAGGACAGCTGCTATTATGCCCACTCCGTTATAGAGCTCAAAACCTGGAGGGTGCAGCGAGACACAGGTATCAGCCCTGATGAGATTGTGAAAGTATCCACAAAATATAATGAGAAGCAGGAGCAAAACTCAAGCAAACTGAAAGGAAATAAATTGTCTTGTGGAGGTGCTGGGAGCAAATCAAGAGGAGGAGTTGGGAAGAGTCTGAACATGAACATGAAGTTTGCCTGTGCTCAGTGCTGGCGGGACGGCCATATCCATGGACCAGACAAAGCCCTCAAGTACTGCACTGCAAAGGCCAGGCACACGTGGACTAAAGAGAGATGGTTACTGCTGGTCAAGTCCTTGGAGAGAAGTAAATGGGTTCAGGTCCGACCGCTGCCACATACCAAGAACTTCCCTCTGCACTATGATATATGTACTCAGATTTTGGAGAAAAGGAAATGTAACTACTCTGGGAACTGCACGTTTGCTCACAGCCAAGAGGAGAAGGACATGTGGATGTATATGAAGAATAATGACTTGCGGGACATGCAGCAGATATATGACATGTGGCTGAATTTAACTGCCCAAAACCGGCAAGCGGATGGAGCCATGCTCACCCAGCCCGTCCCAGAAGAGAAAAACATTGTCATGCCAACTGACTATGCTGAGCTCATGAGTGGCTTCTACTGCCATCTGTGTGGTAAGCACAGTAACGGTGAGCGACAGTGGCAGCAGCACATCTCCTCTGAGAAGCACAAGGACCGAGTGTTCAGCTGTGAGGGAGAAGACGAAGCTCTGACGTGGAGCTACCGTTTCCCTGGCACTTGCTTTGAACTTTGCCCCAAGTTGGATGGCGGCTGTCCTGACGGTGTGAGCTGCGACTACGCCCACAGCTTAGAGGAGCTGCAGGAGTGGACTGAGAGACGGGATTTCCTGCGACGGCAGCTGGCCAAAGCCAGGGACGACATGCTCATCATGCCTGATGAGTGTGACTTTGGGAAGTACAATTATCTACTTCAGGACTGAGaagactttttcttttctttttttactttgtgaGCCATAACTGCCAAACTAGCATTCCAGTTTCTTAAATCATGACCCAAATCAGCAGGTGACATGATAAAACTAGCAGTATTTACAACTGTCCTGCCAAAAGATCACTTGAAGTAATACATAAAGCAcattagagtgcggatcggaccgcatttttctgtccgagcctggcccgcatccgacagagcagtaaccgagcccgacaggcattaagatatttatgtctgagcccgacagttaaaatctc

Function

GO: NA

KEGG:

id description
K24634 SMYD4, ZMYND21; SET and MYND domain-containing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206072 lncRNA downstream 21022 5390505 ~ 5395115 (-) True G152104
TU206047 lncRNA downstream 125776 5287858 ~ 5290361 (-) True G152081
TU206013 lncRNA downstream 245485 5170304 ~ 5170652 (-) True G152052
TU205857 lncRNA downstream 392045 5013517 ~ 5024092 (-) True G151951
TU205827 lncRNA downstream 522819 4869887 ~ 4893318 (-) True G151924
TU206076 lncRNA upstream 9352 5446503 ~ 5448057 (-) True G152107
TU206259 lncRNA upstream 71566 5508717 ~ 5509392 (-) True G152233
TU206282 lncRNA upstream 146228 5583379 ~ 5585169 (-) True G152249
TU206284 lncRNA upstream 146228 5583379 ~ 5587735 (-) False G152249
TU206281 lncRNA upstream 148085 5585236 ~ 5587735 (-) False G152249
XM_039826068.1 mRNA downstream 2158 5399023 ~ 5413979 (-) False tefb
XM_039826067.1 mRNA downstream 8203 5399023 ~ 5407934 (-) True tefb
XM_039824432.1 mRNA downstream 31293 5367065 ~ 5384844 (-) True LOC120574211
XM_039826294.1 mRNA downstream 49387 5360457 ~ 5366750 (-) True polr3h
XM_039824486.1 mRNA upstream 29100 5466251 ~ 5478667 (-) True st13
XM_039824487.1 mRNA upstream 29630 5466781 ~ 5478371 (-) False st13
XM_039825215.1 mRNA upstream 96705 5533856 ~ 5541201 (-) False cbx7a
XM_039825214.1 mRNA upstream 96705 5533856 ~ 5541201 (-) True cbx7a
XM_039825216.1 mRNA upstream 96705 5533856 ~ 5539775 (-) False cbx7a
TU206002 other downstream 188896 5178316 ~ 5227241 (-) False G152043
TU206003 other downstream 229096 5179064 ~ 5187041 (-) True G152043
TU206001 other downstream 232482 5179064 ~ 5183655 (-) False G152043
XR_005641996.1 other downstream 951146 4418726 ~ 4464991 (-) False LOC120575466
XR_005641995.1 other downstream 951146 4418968 ~ 4464991 (-) False LOC120575466
TU206084 other upstream 24695 5461846 ~ 5464418 (-) True G152114
TU206270 other upstream 112167 5549318 ~ 5554250 (-) False top3a
TU206279 other upstream 137529 5574680 ~ 5613668 (-) False atp5mf
TU206260 other upstream 143217 5580368 ~ 5582861 (-) False bud31
TU206278 other upstream 173405 5610556 ~ 5613668 (-) False atp5mf

Expression Profile