RNA id: XM_039826083.1


Basic Information

Item Value
RNA id XM_039826083.1
length 1612
RNA type mRNA
GC content 0.44
exon number 6
gene id dctn5
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6905019 ~ 6909430 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAACCATTCATAGAGTCTGCAGAAGAAGAAAATCTGGGTGCTGACAGCAGAGCTGAGAGCAAAACAGATTATTATTGCTGAATTATCCTCAGTCCCGCTGTCttgaatattttattatatatatatcttatatttaTTCCTAGCCATGGAGTTGTCGGAAATACTGTACAATAAAGCAGAGTACATTGAGACGGCCTCTGGCAACAAAGTGAGCAGACAGTCAGTGCTGTGTGGGAGTCAAAACATCGTACTCAATGGCAAAACTATTGTCATGAATGACTGCATCATCAGAGGAGACCTGGCTAATGTCAGGGTGGGCAGACACTGTGTGGTGAAGAGCCGGAGCGTCATTCGACCACCTTTCAAAAAGTTTAGCAAAGGAGTGGCGTTTTTCCCGCTGCACATCGGAGACCACGTCTTCATCGAGGAGGACTGCGTGGTCAACGCAGCACAGATTGGTTCCTACGTCCACATTGGCAAGAACTGTGTCATAGGTCGTCGCTGTGTGCTGAAGGACTGCTGCAAGATCTTAGACAACACCGTGCTCCCTCCTGAGACCGTGGTGCCGCCTTTTACGGTCTTCTCTGGATGCCCAGGTCTGTTTTCAGGAGAGCTCCCAGAGTGCACGCAGGACCTGATGATTGATGTAACCAAGAGTTACTACCAGAAGTTCTTGCCTCTCAGCCAGATCTGAGTCCTGCCCCCAAAACCGTCAGCAGGATCCACACCCTTTCCAACCAGTTCCAGGTCAGGGTTGGGGTCGCTCATCAGAAGTGGACTCTGAGAGCTCACCTTCTATCCTTCACTTCCCAGAGACCCTGAGTTTCTCAGCCCAAGGACAAACATTTGGTCCTATTACGAACCCTTATATGATTCTAGTTTTTGAGTATGAGAAAAGCACATAAGGAATCAAATGTGATATAGCTGCAGAAGGCACTTTTGTATGTCTGCAGCTCCAAATTGCAATGAAAGTCTTTACTAAACTGCAAACAGAATGATCATGTTTACCATCCCAGCCGATCTGAGATGCCTTCTAGGGGCACGGATAAAAACCGTCAATCTACAGGTGTTAAGTTTTAGATATTTCTTTCTGATGAACCTAATCAAGTATGTTCATGTAGTGTGATGATTTATCCTGGTCAGTGTGCTGTGGAGAAACTCAAGTACCTCTGTGTGGCTGCTGCAAGTACTCTCTGACAGCAGCTGTAGGTGAAGATGAGAAAGTGAAGGAGCTATGAAAGGAAGGTGAAGGGTGGAGCTGTGTAAACAGCATGGACCaaaacaatagcaacaacagttGTGATTAAGGATGTTGCTTGTATATGTTTGTTATTCATGTCCATATTTCATTTGGGGAAGCGGAGCAGCACACTCCTATCAGCAAATTGTGAAAGGTATTCTGTTGTTTTAATCtctgtcattttatttctaaTGTTAAAGAACCCGTTTGCTTTCTCCTTAACTTAATTTCATTATGTTTCAAATTATCAAACTGCAATGTTAATTTGaatatgttacagttttttccgattgctaaacgacagtgggcacaactggagtcacatgtgcaaaactcaaactacagtctgcactacctacagtcacctgagct

Function

GO: NA

KEGG:

id description
K10427 DCTN5; dynactin 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206823 lncRNA downstream 131306 6772880 ~ 6773713 (-) False arhgdig
TU206694 lncRNA downstream 147934 6756791 ~ 6757085 (-) True G152577
XR_005641813.1 lncRNA downstream 193820 6709402 ~ 6711199 (-) True LOC120574035
TU206674 lncRNA downstream 306143 6597999 ~ 6598876 (-) True G152560
TU206672 lncRNA downstream 307176 6597354 ~ 6597843 (-) True G152559
TU206870 lncRNA upstream 103817 7013247 ~ 7013685 (-) True G152720
TU206859 lncRNA upstream 112039 7021469 ~ 7038559 (-) True G152712
TU206881 lncRNA upstream 291257 7200687 ~ 7200912 (-) True G152730
TU206880 lncRNA upstream 294884 7204314 ~ 7206094 (-) True G152729
TU206894 lncRNA upstream 421380 7330810 ~ 7356838 (-) True G152738
XM_039824310.1 mRNA downstream 13849 6861045 ~ 6891170 (-) True usp7
XM_039824311.1 mRNA downstream 13849 6862962 ~ 6891170 (-) False usp7
XM_039824313.1 mRNA downstream 15281 6862962 ~ 6889738 (-) False usp7
XM_039824312.1 mRNA downstream 17195 6862962 ~ 6887824 (-) False usp7
XM_039823947.1 mRNA downstream 68196 6833361 ~ 6836823 (-) True LOC120573992
XM_039826087.1 mRNA upstream 10511 6919941 ~ 6957625 (-) False LOC120575358
XM_039826089.1 mRNA upstream 10511 6919941 ~ 6957599 (-) False LOC120575358
XM_039826085.1 mRNA upstream 10511 6919941 ~ 6957599 (-) False LOC120575358
XM_039826086.1 mRNA upstream 10511 6919941 ~ 6956218 (-) True LOC120575358
XM_039826090.1 mRNA upstream 11829 6921259 ~ 6957599 (-) False LOC120575358
TU206683 other downstream 184376 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 676905 6182408 ~ 6228114 (-) True G152441
TU206279 other downstream 1291351 5574680 ~ 5613668 (-) False atp5mf
XR_005641918.1 other upstream 1172708 8082138 ~ 8100398 (-) False LOC120574885
TU207167 other upstream 1531749 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 1821967 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 1902912 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 1944330 8853760 ~ 8856957 (-) True tufm

Expression Profile