RNA id: XM_039826090.1


Basic Information

Item Value
RNA id XM_039826090.1
length 6104
RNA type mRNA
GC content 0.56
exon number 26
gene id LOC120575358
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6919941 ~ 6957625 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCAGAGAGTTAGGAAAATGGCGATCATGCAGGAGAAATGTCTCCCCTCGTAGATGCTGCAAACGCGTTGAAATTATTTTAGCCTTACTGCCGGCTTTCCTTTCCACTCTGTTGCACTTTATACTTCAATGAGAGATTCGGAATTGAAAGCTGTTGCCACCAAAGAAGCTGAAGCATCGTAACAGGGAACATACCCATAGAGGGAAGAACAGtggatggaagagagagaaagacggaGAGTGTGACGAGGACAGAGGATAAGAAGATACAGCACTGGTCAAAAGTGCCAGAGCATACCAAGTCAAGGCAGAGTCTTAAATCTAAACCAcatcccccccccttccccctccccacatacacacacacaaacacacacatacagtcctCAGCAATGCCAAGGGGGCCTGATCAGCCTGCTGCCCGCTCTGACAAGCCCTGCCTCTTCACCTCACACCCTTGAGCCTGTGCCCGCTGAGCTTTGACTTTTGACCTCCCCTTTGTCGACCTGGGAACCAGAGGTCACTTGTTCTCCACTCAACCCAGGGACGCCCTCCTGCCCAAACAGGAGCTGCAGCCACGGGCCCCACTCACAGGCATGGCTCCCATTCGGGATTCCGTCAGCCACTCCCCTAATCAAACAGGTCTGGAGCATCCTGGCTTAGACTCCCAGTATGAGCCTTCCCCCTGGTCCTCTGGCTCTCCCTGCAGCAGTGACGGCAACAGTAACTGGGGCAAAGTCCTAGTAGAAGGAAGTGCCGACAAACCCAACCCCCCTTCTTCAACCAACTCTTCTGTCTGgcctccctcctcttcttcattCTCTTGCTCTtcgtcttcttcctcttctggcTGCGGGTCAGGATCAGACCCTGAGTTGGCATCAGAATGCATGGACGCAGACTCTAGCTCCTCGATCGGCTCAGAGAAAAACCTCGCCCCTGTGACAACAGTGATGATGATGTCAGCAAATGCTTCTTCCTCTGTGTCTTCTACAGcttcttctccctcctcctctatGGTGACTTCTACCATGATTGTCGGTGTTTCAGCGAACGGAGACAGCAACGGCAACAGTCGTCAGGTAATTAGTGGAGGGATGGGAACCATCAGCGGTGCAAATAATGGAAATAATAACATCACCGGGTCCTCCCACTACTCTGTGGCTGGTTCCAGCAGTATTGGCAGCAATAACATGGGTAACCACAACAACAAGCCCATCAATAACAGTAGTGTATGGGGCAGCAACATGATCCCCACCGGCGGAAGCACCCCCTCCATCAATGTAGGGTTAAACCCAAACACTTTAAACCCAAATGCCAACCATGGTGCCTGGTCGCAGAATCCAAGCCCAGTGTCCCAGGGCCAACGGCCTCCACAGGCTCAGGGGATGAGTTCCAAACTGGGTATAGCTCCCCAACAGGGCCCGATGCTGGGCTGGGGTGGCATGGCAGCTCCAAACAGCAGTATGATGGAAGACACTGAGGTGAATAATGGTACAGCAAGCAGCAATGTGTTAGGAAGCAGCAACAGTGGAAATGGTGGCCTACAACCTACCAACCTTAACACTGAATCCAATGGACCAAATAACACTATTATGAtgaatactactactactactactaatgcCACAATGACCTCTAGTCCACCAAACTCTACCGCCTCACCCCAACTCAGCGGGGATTGTTCCTGGGGCTCTGTTAGAGGAGGGAATGGGGGTCCGCTGGCCAATGGAAACCCCTCATCAGCCCCCCAGCACCCCCAAGGAGAGCTGGGGGGTTCTGGGACCTTCGGTACGCCTTGGGGCGCAACTACCTACCCTGGAGATAAGGGCCCCCCGAATGCAGACACTGTGAACTCCCAAAACCCTGCCTTAATGCAGGCAGGGAACCCCCAAATCTCCTCTACTGCTGCTTACAAGAGTAATAATAACCACAATAACACTGGGGCCCCACGCTGGGACCAGGGGCCCGCCAATAACCCAAACCAGACTCAGAGCAACTTGTCTTGGGGTATCAGCTCAAATCAAATCCCAGCCTCTGCAGGCCAAACACCAGGAAATGGGAACCAAACTACGATGGGCCCTCCAGCAGGGTTACCTCGCCCCTGGGGGAGCAGCGCGTCGTCTTCTTCCTCGTCCTCATCGTCCTCTTCGACATCTAACAACAAGATGTCAAATGGAGAATGGGGATCAACAACTCCTGGTAACAACCATTCAGATGCTGGAAGTCATAAAGGAAACTCTGCCAACAATGGCTGGAAGAGCCTGGAAGATGACGCCATGGGCatgggagggggagggggaggaggaggtggaagcCATGGCTTGGGGAGTGTCACTGGAGGCTGGGGTCGCACTGGAGGAAGTGAGGGAAGCGTAGAGAGCTCCGGAGGCCGATCCAGCTCAGACAGAGACGGCAGTCAGCCAAAAGGGGGAAATCGCAGAAAAGTCGTCCCTCCTGCAACCATACTACCAGCTGTGTTGCAGGCTGATGTGGACCCGAGGGTTCTGTCCAACACTGGATGGGGACAGACACCCATACGGCAGAACACCACCTGGGATGTCAATTCCCCTGCTAACAATCGGCTTCAGGTTCCCAATAGAGACGAAAGAAAGCAAAGCAGCGGAGGCTCCGGATGGGGCACAGCAACACCGGCAGCTCCCTCCCAGACCTCCGGAGGTTGGGGGGGTGGGCCGGGCAGCTCAGGCCCAGGTACAGGAGGTTCTGGCTGGGGAGAGCGGCCATCCTCTGGGTGGGACAGCAAAGTCCCAGCAAGTGGAGGAGGTGGGCAAAATGCCTGGAACGATGGATCCAGCTACAAAgggagcaacaacaacagcagcaacacctGGAGCAATAACATTAACAAAGATGACAGgtCCAATATGTGGACTAATGGGCCCAAACCGCATCAGGGCTGGGGTTCCAATGGTGGAAATGGAAGTGAAGGCTGGGGTAATGGTGGAGATGGTGCCAGAACAGGGGGCAACAACCACTGGGGGGAGCCCCAAAAAGGTGCCAGCTCAGTAGGCTGGGACAGCGACAGCGACCGGTCAGGCTCTGGATGTTGGAGTGAGCAAAGCCGAAccaacaccagcagcagcaaTACCTGGGTAGGGAGCGGAGGATCAAATACTCCAGACCAGAGTACTCCAAACCCAGGCTCCAACTGGGGCGACTCAGTCCACAAACCCAATCCTCAGAGTAACAGCCAGGGCTGGGGTGAGCCAATGAAGAACAACCACGGAGCCCAGAACTGGGGAGAGCCGAATCCCAAGCCCTCCAACGAGTGGGGAAAAGGTCCAGAATCTAACATGTCCAAAGGCAATCCAGCCCTTAACAAGCCCACAGGCTGGCTGGGAGGCCCAATGCCCACTGCAGGTCAGAAAGAGGAAGTAGCAACTGGGTGGgaagagccttctccagagtcTGTTCGTCGGAGGATGGAGATCGATGATGGGACAGCAGCTTGGGGAGACCCTGGTAAATACAGCGGTGGACCTGTCAACATGTGGAACAGGACTGGCCAATCAGACCAGGAGGCCGTAGGCCCATCCACTCAGCACCAGTCCCACCCAGCACGCAGCTCGATGcatcctcctcctcagcccATGCAGACTCATACCCAGGACAAAAGCAGCAGTTCTGTTTGGGGTGAGACTTACCCCCAGAAGAAGGAGTCCTCAACCTGGGAACCTACCCCCGCCCCACCTGTGAAAGTGGACAACGGGACATCTGCCTGGGGGAAGCCCATGGAAGCCAGCACCACCTGGGAAGAACCCAACAGGGATAACCGAGAGTCTGGGCCTGGATGGGGTGGCCAGCATAAGTCTGCTCCAGGTCCCAAGCCCATGGAGACATGGGGTGGTGAGGAGGCGGCCATGGGCAATAGCTGGGACCAGgaagaggaggtggagattGGCATGTGGAGCAACAGCCAACAGGACAACAGGTCCCACGACCAAAACACCTGGAACTACAAGCATAAAGGCTCCAGCAAGATAACCAAACCAGTCAACAAACAGGATGAACCCTGGATGAAACCCTTCATCAACCAGTTCAACAGCATGAACTTCTCTCGAGACTCTCCTGACGACTCCATGAAGACAGGAGCAGGGATGGTGCAGGACAAGCGTATGGACATGGGCAGTATGGGAGACTTCAATGGAGTAATGGGCAAGAACCCAGGCTCTCGACACCAGCTTCACAAGGAGTCTGCCATGGATCGCAGCCCTTACTATGACAAGAATGTAAACCCTATGATGGGTGGCAGCAGTGTAGCACAGGGCCGAGGTGGCCCCCAGTCCCAGGTCCCCCCCCAACCCAACCTCCGTAACCAAGTGCCTCCACCCATTCTGCCCTCTCAGGTGCCTCCATCCATGTTGAAGTACCCAGGAGGTAACGGAGGTCTGAACCCTCTGTTTGGCCCTCAGCAGGTGGCTGTGCTCAACCAACTCTCCCAGCTCAACCAGCTGTCACAGCTCAACCAGATCAACCAGTTACAGcgtcttctcctccagcagcagcagcagcaacaacagcagaaggCTCAGAGCCAGAGAGCCATGCCTGTGGGACGACCGACTGAACAGACACGTCCTATTGGTTCGTCTCCATCAATGATGCCGCCACCACGTCACCTGGACCCCTCCCTGCTGAAACATGCCCCACCACACAAACCGTACCTGGACAACTACTTGTCCCACAATACCCCTGAGATGCAGAAGGATGCTGCTGCTCTCGGATCCTTTAACTTCCCTTTAAGCTTGAACTCTAACCTGAATGTACCCCTGGACATGGGTGGTGGCGGAGCTGTGAGCTACAAAGAGCCGCCCCAGTCCAGACTGAAGAAACTTTGGGCTACTGACCCTCTGGAGCAGAACAGCAAACCTGGTGCTATGTCGTCTGGGCTGCGTCTGGAAGACTCTCCCTTCTATGACTTCCTCTCTCCTGGcccatctcccctgagtccccCCGGCCAATCAATGGGCTCGGTGGGCGATGGCTGGCCGCCCCGTGCCAACTCCCCCCCGCCCCATGGAAACACTGTCACCTGGCCCCCAGagtTCCGGCCCGGGGAGCCTTGGAAAGGTTACCCCAACATTGACCCTGAGACTGACCCTTATGTGACCCCCGGCAGTGTCATCAACAACCTCTCCATCAACACCGTCCGTGACACAGACCACCTCAGGGACAGGAACAACGGGCCATCCTCATCACTAAACACCACGATGCCTTCTAACAGTGCCTGGTCATCCATTCGTGCCTCCAGCCACAGCGGTTCCCTCACCAGTACAGCACAAAGCACTTCAGCCAGACCCAGTGAGTCAAAGTGGTCTCCTGGCGGCGGTTCTGTGTCCAACTCCTCCCTGGCCCATGAGCTGTGGAAGGTCCCCCTGCCTCCCAAGGCGCTGTCTGTGGCAGCCCCATCCAGACCACCACCTGGCCTCACCAGCCAGAAGCCCAGCGCTGCCCCATCCGGTTGGGACGGCTCTGCCCTGAGGCTGGGGGGGTGGGGCTCCTCTGAATCCAGATACACACCTGGTTCCAGTTGGAGTGACAGCAGCAGCTCAGGGAGAACCCAATGGCTTGTTCTGAAAAATCTCACACCTCAGATTGATGGCTCTACCCTGAGGACCTTGTGCATGCAGCACGGCCCTCTGATCACATTCCACCTCAACCTGCCACACGGTAACGCCGTGGTATGCTACAGCTCCAAGGATGAGGCCGCAAAAGCCCAGAAGAGCCTGCACATgtgtGTTTTGGGGAACACTACTATTCTGGCTGAGTTTGCCAGCGAGGAGGAAATCAATCGTTTCTTTGCACAAGGGCAGTCATTGGCCACTCCCTCCTCTGGCTGGCAGGCCATTGGCTCCTCTCAGAGCAGAATGGATCAGTCTCACCCCTTTCCCAGCCGCGCTCCTGAACCTAACCAGTGGAACAGCAGTGAACTCCGCAGCTCCTCACTCTGGGGCGGGCCCAACTATTCCAGTAGCCTGTGGGGGAGCCCCAGTGGCACCGAGGCGGGGAGGATCAGCAGCCCTTCTCCAATGAGCTCCTTCCTCCCGGTGGATCACCTGACAGGGGGTGGGGACTCCATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206823 lncRNA downstream 147546 6772880 ~ 6773713 (-) False arhgdig
TU206694 lncRNA downstream 164174 6756791 ~ 6757085 (-) True G152577
XR_005641813.1 lncRNA downstream 210060 6709402 ~ 6711199 (-) True LOC120574035
TU206674 lncRNA downstream 322383 6597999 ~ 6598876 (-) True G152560
TU206672 lncRNA downstream 323416 6597354 ~ 6597843 (-) True G152559
TU206870 lncRNA upstream 55648 7013247 ~ 7013685 (-) True G152720
TU206859 lncRNA upstream 63870 7021469 ~ 7038559 (-) True G152712
TU206881 lncRNA upstream 243088 7200687 ~ 7200912 (-) True G152730
TU206880 lncRNA upstream 246715 7204314 ~ 7206094 (-) True G152729
TU206894 lncRNA upstream 373211 7330810 ~ 7356838 (-) True G152738
XM_039826083.1 mRNA downstream 11829 6905019 ~ 6909430 (-) True dctn5
XM_039824310.1 mRNA downstream 30089 6861045 ~ 6891170 (-) True usp7
XM_039825197.1 mRNA upstream 22723 6980322 ~ 7005702 (-) False LOC120574761
XM_039825196.1 mRNA upstream 22724 6980323 ~ 7005702 (-) True LOC120574761
XM_039825564.1 mRNA upstream 65111 7022710 ~ 7054549 (-) True cacng3b
XM_039824382.1 mRNA upstream 105257 7062856 ~ 7171440 (-) False LOC120574177
XM_039824381.1 mRNA upstream 118611 7076210 ~ 7171440 (-) True LOC120574177
TU206683 other downstream 200616 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 693145 6182408 ~ 6228114 (-) True G152441
TU206279 other downstream 1307591 5574680 ~ 5613668 (-) False atp5mf
XR_005641918.1 other upstream 1124539 8082138 ~ 8100398 (-) False LOC120574885
TU207167 other upstream 1483580 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 1773798 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 1854743 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 1896161 8853760 ~ 8856957 (-) True tufm

Expression Profile