RNA id: XM_039826106.1


Basic Information

Item Value
RNA id XM_039826106.1
length 3665
RNA type mRNA
GC content 0.39
exon number 11
gene id LOC120575368
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14419362 ~ 14427318 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGCAACATGTACCAGAGATGTACTGATCATTGCTACTGTTGCTGTGCTCCTGATTGGGATTACTGTTACCGCCGTCAGAAGAATACAGACTATGTCAACTGGCTGCCCTGTgacaaccaatcacaacagGGAAATCAGTACGAGGAAGCAGCAACAGAAGTCATCTATGCAACTGTACACTTCACCAACAAAAGAAAGTCAAACGAACCAACTATCGAACCCTTTATAGATTGAGCCTCCCCAATTTGAAATCAAACACATGCCGTTTTGCAGTAATACGTGAGTTTTGAGGATATTTGGTTTctgatttttttcttactttttacaAATATGTAAGATGTGCTGCACATGCATTGCAGTAAAGATACATATTATAATCcagatgaggaaaaaaaaactgtgaaattattaaaaacaacacattagaACACATCTAACCCCTTAACACTAGGAACTCAAAAGATAAGATACCACCAAGAGTCATAAACCAAAAACAGAGTTTAAAAGAATCTTATTGGGATTTCTGTAAATAAGAGACATCTTCATGAATGTACAGATTATTGCTTAcattagtttttgttttaatgcatgttattgtatttctttcacCGTTCCTCTGTGTCAAATGTGTTTGGATcgtgtgcatgcacacactgcCTTTTAAGTTGCTTTCTGGTGCTCggtgtttttataaatcacatgGACTCCTGTTTTGTGCTTTTGGCACTGTAGAAGTTAATTTACTTCCTGTAGTCTTTAGTTCCTGACCATCTCAGGAGTTGTCTAAAATCATGTTCCCAACTGTAAACCTGCGCTACTGACAAGGCTGTAAAAACTGGAAATATGTGAAATAAATAGCTTAATTATGTGAGCTATGAATTATTGTACTGGATAAATGagagcaaaacaaaaagagTGTAGCCTACAGTGAAACTAAATGTGTCCCTGCTGTTTAGTGGTCTTTCTTTTTGTTGATGCAATGAGTTAAACTGACCAGGTCcacatacacataaaacatACCACATAGAGTCATGCATGCAGTTCTTCACTGCAAAAACTACGTAATGTTTAAAATCTTAAACACTCTTCAACATAATGTACCAAGAGAAGGAGGTGACTTCACTTGTTTCTAATAATCAAACGACGCAGCAGAAACAGAGATATCCTCTTCTTTATCCCCCACATTCTTCTTCCTCGCAAAACATTGTGCCtgcattacccacaatgcatctCTATCGCTGACAGTTTGATCAAGCAGAGCTAAGAAGTGGACTTCAGGTATGGTGAGGTCACTCTCTTCACCTCCACACCTCCAGATtcgtttcattttcaaacttgtagtcttaAGCCCCAACCAACGCTGACTTAAGTGACATCATTTGAGGCAATTTATCAGACATCGCTCAGCTCCctggagccacaaaaggctttatacGACTTTTTCACATATGCAGTGCAGTGGTACttttgatgtgtaaaattgaGTTTAATAGCTGATGATTTGTATTGGTGCAGTATATAACAAGGTACAGGTTCAACAATACTGTAGTTTACGTATTGTTACAGGTTCAACAATACTGTAGTTTACGTATTGTATGCACATAGCACTTAGCGGCAAGTTACCAAAAGTAAACATGGAAAATGAATACGGCTAAAAATTACTTTAACAATTGAGTACAGTCATTCCACTAAATAGTAACACTAggttagtgttttaaaaaaacgtCACAGTACCTCTGACTGCTCTACACACAAGAAAGCAACATTATTAGTGCGTGATGTGCACTGTTTCCTCTATGCGTGGTCTCGTTCCATATGTATGCCACTCAGGTTCAGATTGAAGCTGTGTATTGAGTCTGTGGTGTGAGTGACCTGATTTCAGGGGCTGAGAATGTTTTCAAGAGATGATCGAAAAcggtacatacagtacaatacagGAAGCTTTGTTTAGTGGAGGAATAAGAGGAAAGACACACTAACTCTGTGAAAACAATTAAAGTAGCCTGCGGAGACTTTTGCTGAACGTTTAAAATCAAATAGAGACATGTGTGTTGAAGGCAGAAACCTGACATGGACACTGATGCTGCTGTTTCTGACTGGTGCTCTTTGCAGTCAGTGGAAAGTGAATTATCACGAGCAACATATCTGTGCAGTGAAAGACTCGTCTGTTGTCATTCTTTGTTCATTTTACTATCCTGACAACCTGATAGTACAAAGTGTCATATGGGGTCatgaaaaatataatatttttgaTGGTCCTTTCATATTTGACAGCAAGTTGAATAAAACCTCCTTGAGATTTCAGTATATTGGTGACACAAATCACAATTGTTCTTTAAAAATACACCAAGTGGAGCATAATGATACAGGAAAACACACCTTCAGATTTACAACTAACTCCAACGAGGGCAAGTGGACTGGTAGAGTTGGCTCAACATTAAAGGTTGTTGATTTGAGCATTTCGGTTACAAAGCCTAATGGAAACGGAACAACAAAGGAGGGCGACTCTGTGAATCTGACCTGCAGAAACAGCTGTGATGGCAGTAAACTATCTGCTTTCACCTGGTTTAAGAATGGAGAACCTATAACTGAAGGACCTACACTTTATTTAAGCAACATGTCCTCCACAAACTCTGGAAACTACACTTGttctctgaaaacacacacaggaacaactTCAGGAGTCATACACATTGATGTCGAGTATGGCCCCAAGAACACATCAGTGTCTGTCAGACCCTCGATGGAGGCAGACGCCGGCAGCAACATAACcctgacctgcagcagccatgCAAACCCCCCAGTGGAGAATTATACTTGGTTTAAAATGGATGACGATGATGATATAATGGATGTTGGAAACGGGCCTGTGTTCGTCCCTGGTGATGGTGGCCAGTATTTATGCAGTGCCACCAACAAACATGGAAGCCAAAACTCCCCTGTTTTTCCTTTAAAAATTAAACAATATTGGACATTTACCAGAGATGTACTTATCATTCCCATAATTGCCGGGGTTTCAGTGCTTCTGATTGTGACCACTGTTATTGCCATCGGAAAACTCAAAAGTAAAAGGACAAGAGCACCAGAGACTGACTGTGAGGAGGACATACAGAATACGGTCTATGTCAACTATCCTGTTTTTGACAATAACCAATCACAAGAGAGAACTGGATGTGAGGAACAAACACTAGAGCTCATCTACACAGCTGTTGACTTTCACACCAAGAGAAAGTCAAACATGGAGCAGCAGATGGCCTCCCATAACGATGACGAAGTGGTTTACAGCACAGTGTGCAGggAACTCTTGAACCCTTCATATGTTGAAACTCTCTGATTGGACAACAAGCACATGCCGTTTTGCAGGAAAAGGAAACAAATTGTGGCAAAATatcacaaacatacaaaaaccCATTTTCTTCTATCAAGGCTAATTCTTGTTGATCAAAGTGAAGACCAAAAAATGAATATGAAATGTCAAAACATATCTCAAGATTTCAtcgaagagaaaaataaaagttaagttgtatttttctttttttatgcatgttattgtatttctttcacCATGCCTCTGGATCATATGTGTGTGGATGTGCACTAGCTGGCTGTTACGTTGCTTTCTGGTGCTCAGCGTTTTACAAATAATAAATGCTCTTGTTTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641944.1 lncRNA downstream 82288 14330945 ~ 14337074 (-) True LOC120575037
TU209820 lncRNA downstream 92426 14325973 ~ 14326936 (-) True G154825
TU209781 lncRNA downstream 320081 14078514 ~ 14099281 (-) True G154788
TU209785 lncRNA downstream 331596 14085742 ~ 14087766 (-) True G154791
TU209765 lncRNA downstream 362050 14056467 ~ 14057312 (-) False med9
TU209899 lncRNA upstream 29753 14455062 ~ 14457036 (-) False LOC120574967
TU209938 lncRNA upstream 100825 14526134 ~ 14529119 (-) False cenpx
TU209980 lncRNA upstream 202441 14627750 ~ 14664671 (-) False G154948
TU209984 lncRNA upstream 207869 14633178 ~ 14636802 (-) True G154952
TU209985 lncRNA upstream 214793 14640102 ~ 14647069 (-) True G154953
XM_039824079.1 mRNA downstream 2221 14384102 ~ 14417141 (-) False rnf213a
XM_039824077.1 mRNA downstream 2221 14384102 ~ 14417141 (-) True rnf213a
XM_039824078.1 mRNA downstream 2221 14384826 ~ 14417141 (-) False rnf213a
XM_039825773.1 mRNA downstream 130543 14285174 ~ 14288819 (-) True LOC120575134
XM_039824745.1 mRNA downstream 312539 14099455 ~ 14106823 (-) True LOC120574465
XM_039826116.1 mRNA upstream 4712 14430021 ~ 14439111 (-) False LOC120575370
XM_039826115.1 mRNA upstream 4712 14430021 ~ 14439109 (-) True LOC120575370
XM_039826117.1 mRNA upstream 4712 14430021 ~ 14438900 (-) False LOC120575370
XM_039826118.1 mRNA upstream 4712 14430021 ~ 14438816 (-) False LOC120575370
XM_039826316.1 mRNA upstream 16494 14441803 ~ 14451655 (-) True LOC120575491
TU209766 other downstream 362050 14050738 ~ 14057312 (-) False med9
XR_005641817.1 other downstream 997411 13335449 ~ 13421951 (-) False prkar1b
TU209391 other downstream 1439677 12973332 ~ 12979685 (-) False sun1
XR_005641885.1 other downstream 1446552 12956522 ~ 12972810 (-) False iqck
unassigned_transcript_848 other downstream 1576388 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641939.1 other upstream 109662 14534971 ~ 14543992 (-) False LOC120574989
TU210021 other upstream 364747 14790056 ~ 14790778 (-) False LOC120574213
TU210042 other upstream 370717 14796026 ~ 14828220 (-) False LOC120574214
TU210040 other upstream 426630 14851939 ~ 14857557 (-) False LOC120575102
TU210041 other upstream 426630 14851939 ~ 14857557 (-) True LOC120575102

Expression Profile