RNA id: XM_039826144.1


Basic Information

Item Value
RNA id XM_039826144.1
length 5506
RNA type mRNA
GC content 0.41
exon number 6
gene id elavl3
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 16840432 ~ 16856848 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATCAGCAGCTCGCTCTGCCAGCCAGGAGGACGCATAAAAGAAGAACATTGCAGCAGAGGCACAGAAGGAGACTGTGAGAGGAGCAGGGAATTACACATAAAACAGGAGAACCAGAACACCCTCCCCTGGACACACCCTGCTGAGGATCACTGCTTCTCTTTTTTCTGAACCATCGCCCACGCCACTCGGAGAGAACGCTCTCCCTCATCATCATCCAGTAGAAAACCCCTATCTCCTCATTTTCATCCTATAGAGGACACCTACAATCTCAGAGGGCTGAGATTCCCTGGCgaagattgtattttttttcctttttttatttttttttattttcatttggaCTCCTGACAGAACATTACGGCCATATAATAGAAAGGCCGAAGAGCATATATAGACTCAGCCTCCAGCTTCAAGACCAGTGGAAAGAAGGACCTAGATTTCTTTCATTGTACGTCAAGAATGGTTACTATAATCAGCACCATGGAAACCCAGGTGTCCAACGGTCCAAGCGGAACCAGTCTGCCTAACGGTCCAGTCATTAGCACCAATGGCTCCACAGACGACAGCAAAACCAACCTGATCGTCAACTATCTGCCTCAGAACATGACCCAGGAAGAGTTCAAAAGTTTGTTTGGTAGCATTGGAGAGATTGAGTCCTGCAAGCTAGTCAGAGACAAGATAACAGGTCAGAGTTTGGGATATGGCTTTGTAAACTATGTGGATCCAAATGATGCAGATAAGGCCATCAACACACTCAATGGTCTCAAACTGCAGACTAAAACAATCAAGGTATCATATGCCCGGCCAAGCTCAGCTTCTATTCGTGATGCCAACCTTTACGTAAGTGGACTCCCCAAAACTATGAGCCAGAAGGACATGGAGCAGCTGTTCTCCCAATACGGTCGCATCATCACGTCCCGTATCCTAGTGGACCAAGTCACAGGCATATCACGAGGAGTGGGCTTCATCCGGTTTGACAAACGGAATGAAGCAGAGGAGGCCATCAAAGGTCTGAATGGACAGAAGCCTTTGGGTGCTGCCGAGCCCATCACCGTCAAGTTCGCCAACAACCCCAGCCAGAAGACAGGCCAGGCCTTACTGACTCAGCTGTACCAGACTGCTGCCCGCCGCTACACAGGGCCCTTGCACCACCAGACTCAGCGTTTCAGATTCTCCCCCATCACCATTGACAGCATGACCAGCCTGGCAGGTGTCAACCTTACTGGTCCAACTGGAGCTGGCTGGTGCATCTTTGTGTACAACCTTTCCCCAGAGGCGGACGAGAGCGTCCTGTGGCAGCTCTTCGGGCCTTTCGGCGCCGTAACCAACGTCAAGGTCATACGTGACTTCACCACCAACAAATGTAAGGGCTTTGGCTTTGTCACCATGACCAACTACGATGAAGCTGCCATGGCTATCGCTAGCCTTAATGGCTACCGCCTGGGTGACCGCGTGCTGCAGGTTTCCTTCAAGACCAGCAAGCAGCACAAGGCCTGAGAGAGAGGCTGCTGGCACAAGCTCCTTCGACCTGCAGGGAGAGCAACCTGAGCTCCCTGTGCCATCACTCTAAATGGGCCTGGACTGAGTCTCTCTCTGACACATTCTCACACAAATCCATAATATATTatcacaaacacagatacacgcATACACGCACAGACATAACCAAACATATCCATACGTGCAAGCATACACAAGTCAGAgtatcaaacaaacacactagtggagtttttcttttctctttacacAACATGCTAGTCCTTCCCTATATTTGCCTGGATTGAATTAGAAGGGGTACGTAGCTGGTTTGTTGGGTAGGGGCTAGAGCTATCTATTTAGGAGACAGTCTAACGAATGTGACAGAGAATGTGTACTGAGTGCTTTGATTGAATTCAGGCAAATAATGACAACTGATGAACAAAACGATCAAAAATTTAAATGAACGAATATGTGCAATTTACCCAAACTCTTACCCCACCATCTCTCCTATTATCTTGCTGGAGAGGATGTAGTCACTTTTTTACACTTGGGCATTTTGAATCAGCGATTTTTTTAGatcaaagaaaatgaaattaaaaaacagTGTTCTCTTATATACGTCTATtaaaatataactatatattCAATATTTAAGGTGGTTATAATAGCCGAGTATGTAAGCATTTTCTAGAAACTTTGACTACTGTTTCCTGACCTGCATTAGGTGGTGCCTAGCGTAAACGCAGTTTCTCTACCCTTTGTGAGCTTGTTAGCTCAGACCCAATAAGATTTAGGCGAACCAATGAATACTGGTCACAGAAAAGAGTAGTCCAAAAGCCATCATAATCAATCTTTCCCTCACAGTCTCACACCGAACAACATTAAGAGTACACTTCTGTATCACAGAAACCCATTTCAATAACTAGAAGATATATTTAgatcaaaaacatgaaaaatatgaaaatcTTCTTATAATCTATCCTCAGGATGGATTCAACACAAGCAGACTGTCTGTGAACTCAGAGCAGAGTGGCAGTGCTCCCATGGTGACAGTGTTCATTAGTAATTATCTAGTGGGCGAGAGAGTGACGAGTACAAGGGGAAAACCGTTTCACCATAACACAGCCACGTCAAAGGAAAATACCGgtgttttttcactttttgcaTCATTTTTTCATTGCACCtgtattttacattttccaCAGGCCATTTGTCTTTGCATGGCTTTCTCAGCAATAATTTGGTGTGCTATCCCTTTAACTGAAAGGCTATCTGGTGTCAAGCAGAAAAAAGCAAACAAGATGACCAAATTATATTGTTCTTCTACATGCTTTGATTATGAATTTTATTGTACTCAAGACAGGTTAAATCTCCAGATTAATTGAGATGAATGGAAGCAGGGAATTATATAGTTTAAATAAGATTACAAACCAAGTAGCTGCTAAAAGTAACTAGAAGGAAATGTCACCCCAACAACACACCCCATGGACTGAACAATGTTCTAGGCTGGTCTGCAGAGAACTAACCCAGATGAGCAAAAACTCAAGAGCACCGGTATTATTCTTCAGTCTAGTGCACAGATAGAAGCTCCTCCAATAAATGAGGTCAAAGCTTTACCATTCAGTGAAACAGTAACAACATGCATAGAGCAGATTAAGAGGACTGCAGTTCCAAATGACTGAGACATTCAAACATAAAACTGACTTAGAGTCACATGTGTGAGCGATATCTGGCAACGTTAAAATGATCACTGATCTTTTGAGGTGAAAGATTACCAGTTCCTCCAGCTTTGCCAAATGCTACTCAGTTTTATTTAAAACCCCTCAATTCTCTTAAAAGCATCCCAGAAACTTTGAACTCCTACCCTCTTAAAAGATGACTGTACAACATCAAGCCTGCAAATGAGTGTCATAATTATACTTCTGTTTACAACAGAAAGGTATTTATTTGCTTCAGATCTGTTAGGCGCTACCACCAAAATAGCATTTCTCAAAATATCCCCAAACTCAATTGCATGAAAGTTATTTATAGCACCCTTGATGAAACATTAAGGCCAACCTGTCGAGTTGAAACGTCTGTTCCAGACCAGACTTATGATTTACCATGGGGAGAGCTAATGTCTTTCAATATCAAGACATGTGCACATGATCATAGATTAAATAAGGTCAACTATATTCAAGACatttttgcttttgcttttcTAAATGACGCTGTGTTAGCCAAAGAGGACGATCTCTTTGAAAGGATTACATTAGAGATAAATCTATTTTTATACATACAAAGGAACAAGACCATGTGCTGAATTTTTACAGATTCTTAAGCTTGGAAAATTGGGACATCGCATGGCTTTATTTTAAACCCTCTGATCTTTGCAGAGCAAGGGGGAATAAGCATGCGGTGTATGGGTGGGGATTTAGGGAGGGGGCGAAGGAACATTGTATCTCGTACAAACTTAACCGTTCAACCATATCACAACAATTGAAACAAacttaacaaaaacaaatttgatgtaaaaaataaaagtaaaattacagtTTGGGGGTATAACCTGACAGACACATCTATACTTATGAGTGCTTAGACACTCATCTCTTGTCCTGAAGTTGTGTACAGTGTTGCTTCAATGATGGTGCAGTGAAGTGAAGTTCTTTGACTTGAGAATCCCAGACAAAGCTGCAGTGAGACCAGCTCATTGCCCCGCTGAAAAACTGAACAGCTGCTTgcaaataaaaaggtaaaaagcaGATTCAAACAGTAATCCAGATTCATAATGAACACTAAGCATGATTCTTTATGATTAGATATATTTGATTTTTGCCAAAGAATTGCTTTGCAAGTCAGTACCAAGAAGGATAAATTAAGACTAACTATATTATTCCCTGAGTAATTGCTGTACAAATCTATGTTATTTATTGAACAAGGACCCTCTACAATTTCAGTTATCATTACTTTTATATATCTAAGTTGCGCATATCAGTTTGCATTTGTAAATCCTATAACCACTAGACCAAATGCTAAAATGACACAGTTGCAAGCAATACCGTTTGCACAAATTTCATGCACACACCGAATGATGTCATATCTAAAATAAATTACGATGAATCAGTTCACCTCTTGACAAAGGAAAAATCGGATGCATCCATATAATGTATTTCCCCCAACATTTATATCATACGCTTTGTTTTGTGACCAATTTAATCCTTTCAAACCGTTAACATTGCACCACTTACTCTGACATCTTTCGATCTGACTCATACTGTTTCATCCCTGAAATACTCTAAATGATTGTTGCTGGCGTTTCCACAGCTGACCACATAAAGGACTAATCTAGCTATTTTGGGTCGAGAAATTTGCAAGAGTTAGCAGCATCGGACTGAGCACTTGGTGAGACCAGTGACAGACATTTCGAACAACCAAGATAACACGTCACGTTGAACTGCAGCTGGAGTTGTATACCCAGCCATGTCCGATAGTAAAAACAACCCACATACCAAACACACAGCCCAAAATGACCTTCGATACACAGTCTATACAAAGACCTACACCTGATGTACAGTAGAGATCCAAGGACCATGGCAGGAAACAGTACTACACTGCTTAAGCAACAacaataatcatttaaaaagacaaaaaaactttCCTATGGAACAGTAAGTGCAATgtgctttgtttttatattgaCTGAGaacaaatgatatatattttttaaaaaagaaattaaacatcACACTGAAAAGGTTTGCGGAATGGTGAAAGGAGCAAAAGTTcagacaaaaaaatttaaatgaacAGACTCATTAAGAAAATCCAACAAGCAATGAGAGGTCTGATCAGTAAATTTCCATAATCACTTCCTCAGCCCCTAATTTGTGCTCTGACCATGCAAGCTCAAACAAAATGCATATTGGCTGACTTAGAGCAATTCTAAATGACCTTGAAAGGAATACTGTCTAATATATCATCAGTTTTAGCCCATGTCAATTTCAAATATCATTTTTCctgtaatttattaatattattttcaaT

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211033 lncRNA downstream 145 16839035 ~ 16840287 (-) True G155697
TU211032 lncRNA downstream 1715 16836993 ~ 16838717 (-) True G155696
TU211027 lncRNA downstream 4043 16834366 ~ 16836389 (-) True G155693
TU210976 lncRNA downstream 70494 16767433 ~ 16769938 (-) True G155659
TU210956 lncRNA downstream 97471 16741412 ~ 16742961 (-) True G155644
TU211077 lncRNA upstream 53429 16910274 ~ 16911079 (-) True G155722
TU211120 lncRNA upstream 110948 16967793 ~ 16968083 (-) True G155759
TU211137 lncRNA upstream 156859 17013704 ~ 17017779 (-) False mgrn1b
TU211140 lncRNA upstream 180333 17037178 ~ 17037710 (-) True G155775
TU211184 lncRNA upstream 260427 17117272 ~ 17117596 (-) True G155796
XM_039825886.1 mRNA downstream 163993 16657915 ~ 16676439 (-) True s1pr2
XM_039825885.1 mRNA downstream 184473 16643191 ~ 16655959 (-) False dnmt1
XM_039825884.1 mRNA downstream 184473 16643191 ~ 16655959 (-) True dnmt1
XM_039826221.1 mRNA downstream 213699 16621826 ~ 16626733 (-) False angptl6
XM_039826147.1 mRNA upstream 18239 16875084 ~ 16876941 (-) True angptl8
XM_039825560.1 mRNA upstream 64301 16921146 ~ 16922018 (-) True LOC120575000
XM_039825561.1 mRNA upstream 68307 16925152 ~ 16925977 (-) True LOC120575001
XM_039824190.1 mRNA upstream 72230 16929075 ~ 16932936 (-) False LOC120574105
XM_039824191.1 mRNA upstream 72258 16929103 ~ 16935610 (-) True LOC120574105
TU210878 other downstream 198301 16569446 ~ 16642131 (-) True G155583
TU210768 other downstream 581407 16230784 ~ 16259025 (-) False LOC120574432
TU210769 other downstream 595101 16230784 ~ 16245331 (-) False LOC120574432
TU210689 other downstream 684405 16153851 ~ 16156027 (-) False LOC120574545
TU211128 other upstream 176204 17033049 ~ 17035018 (-) False polr3k
TU211291 other upstream 558680 17415525 ~ 17415841 (-) True G155888
unassigned_transcript_855 other upstream 889741 17746586 ~ 17746657 (-) True trnat-cgu
TU211468 other upstream 1163166 18020011 ~ 18022964 (-) False psmg3
XR_005642010.1 other upstream 1495916 18352761 ~ 18352844 (-) True LOC120575519

Expression Profile