RNA id: TCONS_00006872


Basic Information

Item Value
RNA id TCONS_00006872
length 5448
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_003509
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 28107632 ~ 28126139 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAAATCTGAGGATGGACACGGACACGCGCGCGCGCACCTATCCATCATCAATTGCCTCCTTCTTGCCTGGTGCACTGAATCCACTTGAAAACAACGAACGCATAAACAATCAAAGGCAAAAGCCGTTTGATTTGCCGGTGAAACCCAAGAGAAGCGAAGAGTGAGAAGGATGAAAGCCCTCAGTCTGTCATCATCTCATTGGATGTTCGGGTGCGTCTTACCGCAAAGACCCATCATCCGAGCAACTCAGTGAAGGCACAGGCTCTGGAAGCACCTGTCATCACTGCACGATTATAGTTTTGCAAATAGTGATTGATTACATCGATTATTTTAGCATAATTGCGTGCCCGGTGGTCATCATGAAGTTAAGCACAAGTCTGGATGCGGCACGGCGCGTGCACTGAAGACGCTGGAAAGGTCTTCCATCATGCAGAAGAAACAATGCAGGAGGTAGCAGTTTCAGCGCTGACTCAAGACAGGCTCATTTAACCTTATTTAATCACCCTTGGATTCCTATGATGGCCCTGATCTGCCTTTGCGAGTCTGTGAATACATCAGACCAGGATTATGAGTTCTGCAACAGCAGTACGTTCAACTTCACTGGAAATGACAGTGCACACTGTTACCTTCAGACCATTGATGAAGTTCTGTTTAAGCTTCTGGGCCCAAGACGATCTCCGTTCTTCTTCCCTGTAACCTGTACTTACATCCTCATCTTCATGACCGGGGTCTTAGGAAACCTCCTGACCTGCGCTGTAATCACTAAAGATCGAAAAATGCAAACTCCCACCAACTTGTATCTCTTTAGCCTGGCCATCTCCGATCTTCTAGTGCTACTCTTCGGGATGCCTCTGGAAATCTACGAACTTTGGCAAAACTACCCTTTTCCCTTCGGCGAGAGCATCTGCTGCTTTAAAATCTTCTTGTTCGAAACAGTTTGCTTTGCTTCCGTGTTAAACGTCACAGTGCTAAGTGTGGAGCGATACATAGCTGTGATTCACCCGCTCAAAACCCGTTACGCCATCACCAACAAGCACGCTCGAAGGGTCATCGCTGGGGTTTGGGCTATGTCTCTGCTCTGCGCCGTCCCGAACACCTCCCTCCATGGCCTGCAGTATCAGTATCTGCCGGAGAGGGTTCAGGAATCGGCTACCTGCAACCTGCTCAAGCCCAAATGGATGTACAACTTGGTGATCCAGATCACAACTGTGCTCTTCTACTTTGTTCCCATGATGATGATCAGCGTGCTGTATCTGATGATCGGTCTGACGCTTGGCAGAGGGCAGAAGCAGAAAAAGGACAAGCTGGGAAGCAATCACAGCAACGACAGCTGGAAAATCCATCTGGACAGCAGACGGAGAAGGCAGGTCACCAAGATGCACTTTGTGGTGGTATTAGTGTTTGCCATCTGCTGGGCTCCGTTCCACATCGACCGGCTCTTATGGAGCTTCATCACCAGTTGGACAGACCACATGCATAACATCTTTGAATATGTGCACATAATCTCCGGCGTGCTCTTCTACCTCAGTTCAGCTGTAAACCCCATAATCTACAACCTGCTTTCCAGCCGCTTCCGGGAACGGTTTCAAGCGCTGGTGTGCAGTCGCCTGTCAACTAGATCCTCACGTAATGATTCCATGCCTTTTTACATCATACCCAAAGACCCCCCGACTGATTTCAAACGGACTGGATAAGAGCAGGAACACACATGGCCTTTTCCTTTTGTCATTATCAGCAGCGGGAGgaagggaatgaatgaatgatatgctTTGATGTGAGACAACATACTCTGCGCACTCACACGGCATTGTGCTATTCACTCCAAGAATAGAAACAGAAGATGTGAAGCATGCCTGTAAACACTACGGTATTGACTGAAACCACATGTTAATGGACAGGTAAATGGGTTTGGATTGATATGGACTTGGCCTTTGGAAGATGATGATTAAACAGCACGGTCGTGTCATCAAAATTTAAagtatgaatgaaaatgaaataccGTTCTGTAGGAGTGCCTATTAAGCCCATTCATGGTCAATATTGCAGTTCCATTAGTGGAAAGAACAAGCAACAACAAGGTCATTGAATCATCAGATGACAAAATGCTACTATGCATCCAATTAAAGATGAAACTGAACAATTGTTTAAAACACATGGATTGAGGTCTGTATCAAATCTTCTGTATAATTCTGTTTGTGTCATAAGGCAAGTCAAGTTCAGCTCCTCTATAATTctaatataggctcattctggaaatgtagagTTGCTGGAAATTACGAATTATGTATCCAGAGctacgcatggctgcatttcatctttaaaatgaactctacgtagtggtatgatgccattcctttttgcgcttactaGATCACTGCTTACCTGCATGTAGACTGCTTTTCTgccgttaccagtttgtctggtagcttaACACATACGCCGGcgtacttgagatgcagagaaaaGTCGACCGCGACGATGGGGTTTGAATTTGGTGAAGAACAGTTGCAGAATGCAGatcagacaaaaacagaatccaaaaaataaaataaacacgtaAATAAAAGGGtgtgaatgtggtaaaatataaaaatgtggtaaaattagggggcttttctttttctggattgcttttgaaaacactgcggttgggtttagagaagaggGTGGGCGCTGGCCAAtatgtgcttttttaaaatactattgggtCCTGTTTACTGCCAGTTAAATATGAcccaatttagattttttgctcaaatgtgacacagatcggatctgttctatgactgtgtaaacaccaaaacaaaaatgcatgcattcggatattcagatatcagtttcaggcctccttcatttgtggaaataaatcagatattaatGGGATATGTGACTATGCGAccatcatgtaaacaggcagatcagatttattgaggcattccattttgtacgtcattaaacttgcgtCAATATGGTACTTCTCCAAGGTTTAATGACGAAGAAGGAAGGTGTGTGAAGATGCCAATGCGGTAAcaaaacaacagaggaaacatggaggaggaaagggGTCAGTCCCCACTATTTGCTCCCATTAGAcatgagatctctctcgtacccacaaattcctctgaatggtggaagACATCATATGTAAACTATAggtgcaagctgcgatgacggcccttttcttcctcctccgcctcaaaatcattttaaagttggcccaactttgcatatttcgcagagctgaAAGAAAGACAATTTCTTTCATTGTGACTAGTGTGgtgcagatgctagaacccgctgTAAATATAGTATACTATAGCAAGTGTAAACAAAttaattggatatgggtcacagttaaaaaaacatgtaagcagacaggcaaaaaaaatcagatatactgtaggcaacaaatcagaattgggcatcaagacctaaCTGTAAACGAGGtcttggttgtgtttagggaaaaGGGAGGGGGAGGGTATCattcagttggtcagtcagtcagtcagtcaacagcggcctctagtagatttacacgagaacagcaggcacgattTGCacattacaataatatatataggggtacgtaatcacaatgagcctgggttgtctaaTTATGCTTTATTCATTAAGATGATGCATTAATGTAGATTACTACACTGTTACTAGAATGaataattacacagtatttagctgaaatatgaactgtattttactgttggACAGTTATGCTACTGTagcatgttactgtattttatgggcatattttaaagtcattgtgaaatttactgtatattctacagtaaatacaattctgtaaatgCATATACAGTAAGATAAATGGCGccgtaaatgtaaatacagtaaataatctATCTATCGTATAATATAATAAGAGGTGAGTCAATAGATAATAGGAAAGGTTCAAGAAAAATGcgagttttgttttcattttcgatTGGactttgcaggtcagagttcagcaACCTTTGCAAGGTAGCGATATAAAAAATATCTTTTCACACAAGCTTAACTTTCCGGTCTGTAGCATTTgtatgcgtatgaatggaagtctacaggacgaaaagtgcagtgtgacattGGCTTTAGAGAGTTGGGGTGCAAAAAAACTGGGTTCCACAATCAATTTCAGTTAGTTCAACAGTTTTGCAGCGTgttgctgtattttaaagtgGCATTGTAATAATTACTGTATATcatacagtaaagatatacatgtAGTTCTGTAAATACATGTACCGCAAGATAAATGgttgtgtaaatataaataattttttttctgtaattgtttTAGAGTAAGTTACTGGCGAAATCCTGcctgtaagttactgtagattttacaggacagtgtatgtatgtatatatgtatgtatgtttgtatgtttgtatccatccatccatccatccatccatccaaggaaagaaaaaaaaaagagtctgtgTCATTTAAAAAGTCACATGTTGTATATTATATGCCATTTGACAATATCCGTTCCAAAACAAGCGCTGTCAGTCTTGATGGGAACGAGCTGCTCTTTTTGTCATTTGTGTCATAAACAGAGGGAAAACACACATCGCtcccttgatttatttttctccaGCACTAGAGAGGAAGCAGCACACTTCACACCAGAAGGGAGTCATCAGAAAAACACACAGTACAATAAGTGCAGCACGACTCGTTAATCTTACAGACTATTATGagaaaagtgtgtatttttatgcTTCAATTAACTGTAGGGGCTTGTGCGGTACGAGAATGTAATGTGCCAGGACAATTCTGGCTTAATTGTCGCAATTACGGACTTTCATTGTTGGTTTAGAAATGTAAGTGTGCCAAAAGTGCTTTACTAGAATACTGTATTATGAGAATAGGAATATTTCTAGTAACGGTGGATTGTGACTCTTCTGGCTTTACTTTTAGATGAAGTGAACGTTGCTCGTTATTGGTTTCTTTTCCATTCTACTGACCTTGGCTTGTTGACAGTTTAATCTAGCAGCTTCATCCTACTGTGACATAAATAAGAGGTGAACGGGTAGCTGTCTTGAGGGAAGATTTTGATAAGTGTAATTTATAGTacatgagagagagaggagggagAGGGGGAAATTAATAAGCGTAACACTAATatcataaatgaaacaaaaatacttTGCAATTATAACGCATATATGTTGCACTATATATTAAAAAGCTGTCAGTTTTAGAGTGCGTCTTCATAAATAATGTTTTCCTCCTAATAATACAATTATGAGTCTATTGATACATAAAGTGTTGTGTGTTTGCCTGAATATTGCTGCTGtatttttgttgtaaataaatgtatttattctgcTGTACAAACTAAGCCTAAGCAAATAattgtgaaaaaataaacttaattgccTTCTCACAtagtttcttctttctttctagGTG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0048512 circadian behavior biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001607 neuromedin U receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-567 Predicted to enable neuromedin U receptor activity. Acts upstream of or within circadian behavior. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in brainstem; forebrain; and hypothalamus.

Ensembl:

ensembl_id ENSDART00000177721

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006868 lncRNA upstream 363350 27738489 ~ 27744282 (+) True XLOC_003507
TCONS_00008623 lncRNA upstream 376457 27729240 ~ 27731175 (+) True XLOC_003506
TCONS_00008403 lncRNA upstream 458050 27625084 ~ 27649582 (+) False XLOC_003505
TCONS_00008624 lncRNA downstream 292635 28418774 ~ 28424314 (+) True XLOC_003510
TCONS_00006877 lncRNA downstream 316234 28442373 ~ 28446862 (+) False XLOC_003511
TCONS_00006878 lncRNA downstream 316234 28442373 ~ 28447433 (+) False XLOC_003511
TCONS_00008625 lncRNA downstream 320174 28446313 ~ 28447071 (+) True XLOC_003511
TCONS_00006880 lncRNA downstream 391423 28517562 ~ 28519901 (+) False XLOC_003513
TCONS_00006870 mRNA upstream 97461 27969045 ~ 28010171 (+) False XLOC_003508
TCONS_00006869 mRNA upstream 109858 27968834 ~ 27997774 (+) False XLOC_003508
TCONS_00006871 mRNA upstream 118238 27973055 ~ 27989394 (+) True XLOC_003508
TCONS_00006866 mRNA upstream 561913 27543093 ~ 27545719 (+) True XLOC_003504
TCONS_00006858 mRNA upstream 723900 27274355 ~ 27383732 (+) False XLOC_003500
TCONS_00006874 mRNA downstream 40026 28166165 ~ 28418985 (+) False XLOC_003510
TCONS_00006875 mRNA downstream 40026 28166165 ~ 28421094 (+) False XLOC_003510
TCONS_00006876 mRNA downstream 92002 28218141 ~ 28424186 (+) False XLOC_003510
TCONS_00006879 mRNA downstream 350159 28476298 ~ 28514978 (+) True XLOC_003512
TCONS_00006888 mRNA downstream 491425 28617564 ~ 28619811 (+) True XLOC_003515
TCONS_00006865 other upstream 587059 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006853 other upstream 1493045 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006838 other upstream 2029571 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006817 other upstream 2624662 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006814 other upstream 2629214 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006890 other downstream 1225962 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006893 other downstream 1440608 29566747 ~ 29571528 (+) True XLOC_003523
TCONS_00006949 other downstream 2845895 30972034 ~ 30997832 (+) False XLOC_003549
TCONS_00006950 other downstream 2848632 30974771 ~ 30974892 (+) True XLOC_003550
TCONS_00006952 other downstream 2889380 31015519 ~ 31024572 (+) True XLOC_003549

Expression Profile

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