RNA id: XM_039826242.1


Basic Information

Item Value
RNA id XM_039826242.1
length 2205
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC120575446
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13860150 ~ 13863534 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGCGGAAGTTACGTGTCCACCTGGGCGACACTTACaactcatttgtttatttatgtagctagctagctgtcgaTAGAAATGTGAGTTTATGTGTGTATGACTACATCATAGCTATTTCATCATGGTACGTGAACTTATTTAAACACCAATTGATCGTCGACAAGAGATTAACAGCCAAACTCACAGAGTCCCTCTGGAGTGAGAGACCATGGGCCGGTTGGATGATGCCGCCAAACACAAAGTGGTGGAGCTGCGGAAGGCGGGTCTGAGTTTCCGTAAGATCAAAGCTGTGCTGGAGCTGGAGAACATCAAGGTGTCTGCCCAGGCCATCTACCTGTTCCTGAGGGAGTATCAAGGGAGGCCGCCAGGGAGGGTTAGACCTGTGGAGGCTGGAAGCAGCACATCAACCGCACAGGTGCAGCCTCAAGTTGGAGCAACACAAGACAGCTGGAGTAACATGCGTCTCCAAAATCTTCTGCGGGAGGCATCTCACCATGCTGGCTTTACAGCCGCTGCAAATTTTGCCAAACAGACTTCCACAAATCCAGATGCTGGTGCGAAGCCATGTGGGTCTGGAAAGACCAGTGGAGGCAGCAGGCCAGAACAACAACACGAGGGAGATAAGGAGGAAAATGACATCCAGATTGTTAGCGTCACCTCCCTTGCACAGAGCAGCCAACAAAGAGTTCCCCAGTCCACTGTAACAAGATCAGAGGCCGGTGCTGTGTCTTCTACACTAACAGCTCAAGGAGTAACCATGAGGAAGAGAGTTACACCTTCTCCAGCCACTAATGCAATGCTGGCAGCTCGAAAGAGGCTTTTGGATAAAGCGCTGTCACACAGGATGAAGTCATTCCACCAGGTGGCGTCACTGTTGAGGAGAGATCACTCGAGCGTCCAAGGTGCTGATTTgagaagtgcaatgcaacagcCACCCGAAACTTATGATCTGACCACTGAAAAGCCTCTCCCTCGGGTTGGCATTCGTCTTCCTAACCGGTCACCAGCACCTTTAACATCCTCGGCCCCTGGGGTTGCCGTCATCCGTCTACAGACCCCTGGAGGCCAGGGCGCCACTAGTAGTGAGGGGAACCCGAGCCCCCAGCAGGCAGTCCAGGACACTGGAGGGAGAGGTGGTCTACAGGATCAGATTCAGACCCTGGGCTCTGAGGTGCGCAGCTTGGGTCTGGCAGTGAAGATGCTGGTGGAGCAGCAGTGCTGCCTGGAGAGGGAGCAGGCGCAGCAGACACACATTCAGAAGCAGATCCTCAGCACTCTGCAGAGCCTTGCTGCCAAACTGGGACGTTGTAGCGTTgttcaacagcagcacaaaaaAACTCCATCACCCTCTGGTTTGCCAACCGCTTCTGCATCTACCTCATTCAGCCCAGAAACCTTCAACTTCAGTCAAGGCACGTAcactcagtgcagccaaacccAGCCAAGCTACAACTCTTTAGAGAGTTTAGAAAATGTAGAGGCCTTTAAATTGCCAGGCCTGAGCCCTTCAAGCATTAATGGGTTTCCACCATGTAGCAATGCTGAGAACCTCCAACTTACTCAAACTCCCGCTCATACACAGCCGTATGCAGTTGCTTACCCACAGCAAAACAGTCAAACACTCATGCCACCCTACACACAGTCCTTTGTTTCTACATACGGCCAGTCACATTCTCAGACTTTCAGAGGATCAGAGAGTAAAACATCTGATTTCTCAAGCAGCTGTTCAGCAAGGACTCTCCAGGACTGCAGTGTGTCCACCCAGCCGGTGATGAACTCTAACCACTCTTCACAGGATCAACAGATCAATATTATCAAAGTGGAAGGACCTTAGAGGCCTTCAGATGCCACATAGTGTTTTGGGACCATAAGGGCTTGGCTGtgcttttaaaatacaaatttaaGATACACATGTTTTTACAATGAACAAATGCTGTAGCATTTCTTaaactaatttattttatttccaaagTACATTTTAAGAGAATACAAATGCAATGCTTTAGTAATCATGTGTTTATAATTTGTCTTTACAATAGGCAATTAGAGAAAATGATTATGTGCAGGCACTTTGTCATTTTTTGtcacaatgttttttattttgtatctatTATTTTTGTATCACTAGGACTGGCATTACAAACTGTTAGTTTTCATACCTCTATGctaacttaaaataaataaagagatggTTATCGTCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209678 lncRNA downstream 32359 13755664 ~ 13827791 (-) False G154717
TU209680 lncRNA downstream 32359 13755664 ~ 13827791 (-) False G154717
TU209682 lncRNA downstream 32359 13755664 ~ 13827791 (-) False G154717
TU209681 lncRNA downstream 32359 13783840 ~ 13827791 (-) False G154717
TU209677 lncRNA downstream 32359 13824962 ~ 13827791 (-) True G154717
XR_005641993.1 lncRNA upstream 73234 13936768 ~ 13946397 (-) True LOC120575453
TU209765 lncRNA upstream 192933 14056467 ~ 14057312 (-) False med9
TU209781 lncRNA upstream 214980 14078514 ~ 14099281 (-) True G154788
TU209785 lncRNA upstream 222208 14085742 ~ 14087766 (-) True G154791
TU209820 lncRNA upstream 462439 14325973 ~ 14326936 (-) True G154825
XM_039823951.1 mRNA downstream 95614 13757750 ~ 13764536 (-) False hmox2b
XM_039823949.1 mRNA downstream 95644 13757750 ~ 13764506 (-) True hmox2b
XM_039823950.1 mRNA downstream 97765 13757750 ~ 13762385 (-) False hmox2b
XM_039825272.1 mRNA downstream 111548 13636809 ~ 13748602 (-) True coro7
XM_039825280.1 mRNA downstream 223988 13632142 ~ 13636162 (-) True pam16
XM_039826248.1 mRNA upstream 20803 13884337 ~ 13950756 (-) True LOC120575451
XM_039823816.1 mRNA upstream 192880 14056414 ~ 14057354 (-) True med9
XM_039824745.1 mRNA upstream 235921 14099455 ~ 14106823 (-) True LOC120574465
XM_039825773.1 mRNA upstream 421640 14285174 ~ 14288819 (-) True LOC120575134
XM_039824079.1 mRNA upstream 520568 14384102 ~ 14417141 (-) False rnf213a
XR_005641817.1 other downstream 438199 13335449 ~ 13421951 (-) False prkar1b
TU209391 other downstream 880465 12973332 ~ 12979685 (-) False sun1
XR_005641885.1 other downstream 887340 12956522 ~ 12972810 (-) False iqck
unassigned_transcript_848 other downstream 1017176 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641884.1 other downstream 1294679 12427504 ~ 12565471 (-) False cep112
TU209766 other upstream 187204 14050738 ~ 14057312 (-) False med9
XR_005641939.1 other upstream 671437 14534971 ~ 14543992 (-) False LOC120574989
TU210021 other upstream 926522 14790056 ~ 14790778 (-) False LOC120574213
TU210042 other upstream 932492 14796026 ~ 14828220 (-) False LOC120574214
TU210040 other upstream 988405 14851939 ~ 14857557 (-) False LOC120575102

Expression Profile