RNA id: XM_039826258.1


Basic Information

Item Value
RNA id XM_039826258.1
length 2401
RNA type mRNA
GC content 0.46
exon number 5
gene id nptx1l
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8297738 ~ 8302271 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGCGCTCCCACAAACGGAGTACACCAACAAGGAGATCCGAGCGCATCAAGTCACTGCGGCTCATCAACCAAAAACAAATCCCAACCCAGCACCGAAGAAGACATGCAGGCAACAAAGAACGGAATCTGTTGGAGACTTTTTCTATTTTCATGCCTGTTTTTGGAGAGTTCATCTCAAGCCTTTGGCGGACAGACGCAGTTCATTTGCACGTCCGTACCCAAGGATATGGACATTTGCGCAGCCACTTTGCAGAACAGTGTGCCAGGAGAGGACTTGAAGACCACTGTTATGCAGCTGCGGGAGACGGTTTTGCAGCAGAAAGAGACGATCATGAACCAAAAAGAGACTATCAGAGAACTGACCTCAAAGTTGGCTCGGTGTGAGAGCCAGAGCGGCGCCGAGCCCGGGGACGCGCGGCCCGGGGGCAGGAGGAAAGAAGCTGGGACCAAAAACACAATGGGGGATGTATCGAGGGGCCCCGCTGACACTTTGGCGCAACTATCACAGACTTTACAGTCGCTGAAACAGAGATTAGAAAACCTGGAGCAATTCAGCAGAAGTAACAACTCGGTGCAGGCGAACAGCCTCAAAGACCTGCTCCAAAGTAAAATCGACGACCTGGAGAAGCAGGTGTTGTCCCGAGTGAACAGCATcgaggaagggaagcccggacTTCGCAATGAGACGGAGCAGCGTGGGAGAGTGGAGTCTACCCTCACATCTCTACACCAGAGGATCACCGACCTGGAGAAAGGTCAAAGAGAGAACAGGCCTCTGGATAAATTTCAGCTCACGTTCCCACTGAGAACCAACTACATGTACGCAAAAGTGAAGAAGAGTTTGCCAGAGATGTACGCCCTCACTGTGTGCATGTGGCTGAAGTCCAACGCGTCTCCGGGAGTGGGCACACCTTTCTCCTACGCGGTTCCGGGTCAAGCCAACGAGCTGGTCCTCATAGAGTGGGGAAACAACCCAATGGAGTTACTAATAAATGACAAGGTTGCTAAGCTGCCTATCCTTATCAATGATGGAAAGTGGCACCACATCTGCATAACCTGGACCACTCGTGATGGTGTTTGGGAAGCTTTCCAAGATGGCGTCAAGAGAGGGAGTGGAGAGAACCTGGCTCCATATCATCCTATCAAACCACAGGGCCTGCTGATCCTCGGTCAAGAGCagGACATGCTGGGAGGAGGATTTGATGCCACACAAGCTTTTGTTGGAGACCTGGCAAATTTTCACATCTGGGATCGGAAACTATCTGTCGGAGAGATATACAATCTAGCGACGTGCAGCAGCAAGGCACAGGTGGGCAACGTTTTTGCGTGGCTGGAGACAAACCTTGATATTTACGGAGGTGCCTCGAAGTGGACATTTGAAGCTTGTCGCCAGCTCAACTGAACTGCAGGGAAGAGAAGATCAACACATTTGTTAAAGCCACTCTGTTGTCACAGCATCGGTAAACTAAAGTGAAAGATCAGGATTATTTCAATGAATAGCATCTGGATTTGTTATAGATATTCGAAAAGATCAATTGTGGACACTGGATAGATTTTTTACCAGATATTCATGAGGAACAGGTCACTGCAAATGGACGCTTTGGCATCCTGTGGTGCTCGAATGCACCGTCAAGCCTAATTGtggtttgaaaaaaaagcagcccGGAGCCGCTCCAGAGAGCAGAGGATGCTCTCTGAGACCAAAATGCCCGGCCAGCATCAAAAGTACAGTAGGTCATGTAGTTTTTAGCCAACAGATGTCACGCAATTCAACAAAAATGACTGACTTCTTCAAATGTCTTTTCTGTCTCGACTGCCAGGGATTTTCACTGTGAAAAAGGACTAGGTGGACTTCTTTAAAAGGAACGTGCTCTTCAAGAGGTCACGAATTAGACAACATTGTTTCTCTCTCACCATTTGTTCTCTACCACCACTTGCTTGACGTGATTTTGTGTAAAGGACGTATTTATTGCCAACCTTCGAGCCTGAGTGCCTTGggctgttgaaaaaaaaaactcagcacATTCATTATGATTTGCAGTGTTcgtttattttactgttaattcATTTTGAAAAGAAGTGTTTCTTGTAAGACTCTGAATGGAGGTAGGATCAGATTGTTCATTGTAAATGGATGAGATTGTTTATTGTAAAATGCAATTCATTGATGATAATGACGCATTTGGCAGATGTTTGTACTTCAATGGAAATGTTCTCTGTACAGTAACAGCATGTCTTAACTTCTGTAAATGCTGCGTCAGCATCTATGATCTTTGCTTTTACTATCTGACTTCTGGTTTGAGATTTTATACTGTATTGTTATATGCTTAAAGCATGGCAACAcggacagattaaaaaaaagttctagTTTTTGTAATAAATTGTGATACTTGAATCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207140 lncRNA downstream 4481 8293038 ~ 8293257 (-) True G152925
TU207139 lncRNA downstream 5523 8291900 ~ 8292215 (-) True G152924
TU207058 lncRNA downstream 205469 8087926 ~ 8092269 (-) False G152863
TU207059 lncRNA downstream 205469 8087926 ~ 8092269 (-) False G152863
TU207063 lncRNA downstream 205469 8087926 ~ 8092269 (-) False G152863
TU207389 lncRNA upstream 147751 8450022 ~ 8454668 (-) True G153106
TU207394 lncRNA upstream 160908 8463179 ~ 8558912 (-) True G153111
TU207395 lncRNA upstream 166033 8468304 ~ 8470293 (-) True G153112
TU207400 lncRNA upstream 187785 8490056 ~ 8537956 (-) True G153116
TU207409 lncRNA upstream 238107 8540378 ~ 8588188 (-) False G153124
XM_039823722.1 mRNA downstream 155905 8137587 ~ 8141833 (-) False LOC120573855
XM_039823725.1 mRNA downstream 155907 8137584 ~ 8141831 (-) False LOC120573855
XM_039823723.1 mRNA downstream 155911 8137584 ~ 8141827 (-) True LOC120573855
XM_039825025.1 mRNA downstream 181739 8114974 ~ 8115999 (-) True rasd4
XM_039825384.1 mRNA downstream 197340 8093052 ~ 8100398 (-) True LOC120574885
XM_039826280.1 mRNA upstream 172209 8474480 ~ 8484692 (-) True cdr2l
XM_039825717.1 mRNA upstream 186108 8488379 ~ 8504839 (-) False recql5
XM_039825715.1 mRNA upstream 186108 8488379 ~ 8504839 (-) False recql5
XM_039825716.1 mRNA upstream 186108 8488379 ~ 8504819 (-) True recql5
XM_039826095.1 mRNA upstream 204046 8506317 ~ 8511840 (-) True LOC120575363
XR_005641918.1 other downstream 197340 8082138 ~ 8100398 (-) False LOC120574885
TU206683 other downstream 1577095 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 2069624 6182408 ~ 6228114 (-) True G152441
TU206278 other downstream 2684070 5610556 ~ 5613668 (-) False atp5mf
TU206260 other downstream 2714877 5580368 ~ 5582861 (-) False bud31
TU207167 other upstream 138908 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 429126 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 510071 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 551489 8853760 ~ 8856957 (-) True tufm
TU207546 other upstream 551489 8853760 ~ 8857571 (-) False tufm

Expression Profile