RNA id: XM_039826259.1


Basic Information

Item Value
RNA id XM_039826259.1
length 1629
RNA type mRNA
GC content 0.52
exon number 12
gene id ddx47
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 4305836 ~ 4314336 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTACCGCATCTGCGCATTGCGGAGCTCAGCTGAAGACACGTTGGGGCGAAAAACATGGCGGACGACGATGTGGAAAGCGTGAAGCCAAACACAGACGAAACACTCGTTAGTTTGAGTAGTGACTGTGATAACAGTCACTTGGATAGCGGCGAAAACGAGGAGGCCGTAAAGACCTTCAAGGATTTGGGTGTTACCGAGGTCCTCTGTGAGGCTTGTGATCAGCTGGGATGGAAGAGTCCAACAAAGATTCAGATAGAAGCTGTTCCAGTAGCCCTGCAAGGGAGGGATGTTATCGGCCTGGCAGAGACGGGTTCAGGGAAGACGGGGGCCTTTGCGCTGCCCATCCTGCAGTCGCTGCTGTCCTCGCCCCAGAGGCTCCACACTCTCATCCTCACCCCTACCAGGGAGTTGGCTTTTCAGATCTCTGAGCAGTTTGAGGCCCTGGGCTCCAGCATTGGCATTAAGTGTGCTGTCATAGTTGGAGGAATCGATATGATGTCCCAGTCCTTGGTGTTGGCTAAAAAACCACACATTGTTATTGCCACACCCGGTCGGTTGATAGACCACATGGAGAACACAAAGGGCTTCTCCCTGCGAGCTCTGAAGTTCCTGGTCATGGACGAAGCCGACAGAATCCTCAACATGGACTTTGAGACGGAGGTGGATAAAATCTTGAAGGTGATTCCCAGAGAGAGGCGCACCTTCTTGTTCTCTGCCACCATGACCAAAAAGGTCCAGAAACTCCAGAGAGCCGCTCTGAAAGATCCCGTCATGTGTGCGGTGTCCACCAAATACTCAACAGTAGACAAACTCCAGCAGTACTACGTCTTCATACCATCCAAGTACAAGGACTGTTACCTGGTGTCCATCCTCAACGAGCTGGCCGGCAActcctttattattttctgcagcACGTGTAACAATGCCCAACGGGTGGCGCTGTTGTTAAGGAACCTTGGCATCACTGCTATCCCTCTTCATGGCCAGATGAGTCAGAACAAGCGTCTCGGATCGCTGAACAAGTTCAAGTCCAAGTCTCGGTCGGTGCTGCTGGCGACGGACGTGGCGTCCAGAGGACTGGACATCCCTCACGTCGACTGCGTCATCAACTACGACATCCCCACTCACTCCAAGGACTACATCCACAGAGTCGGACGGACAGCCAGAGCAGGGCGCTCTGGGAAATCCATCACTTTTGTCACTCAATATGACGTGGAGCTCTTCCAGCGAATCGAAAGCCTGATTGGGAAGAAACTTCCGGCCTACCCAACCCAGGAAGATGAAGTGATGATGTTGGTTGAGAGGGTGAGCGAGGCCCAGAGATTTGCCAGGCTGGAAATGAAGGAGCAAGGTGAGAAAAGGAAAAGGCCCAGAGGAGGAAATGGAGACGAGGATGACACGGAACAAGCAAGCGGAGTGAGGAAGAaagtgagaggaggaggagcaggggggaggaggaggaggaggaggaggaagaggagggatgAAGAAGAGGGGTGCAGCAGCCTGGAGGGGAGGACGCTGAATCCTCCTACATTAACAGACTGTACATAACCATAACACATGCGTTTCCTGCCCCTCTACAAGATTTTTCCATTTGTAATAAAATGCCATTGTAAAAACCAGA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14777 DDX47, RRP3; ATP-dependent RNA helicase DDX47/RRP3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205520 lncRNA downstream 37182 4268330 ~ 4268654 (-) True G151691
TU205521 lncRNA downstream 37182 4268330 ~ 4268654 (-) False G151691
TU205459 lncRNA downstream 140338 4130804 ~ 4165498 (-) True G151639
TU205425 lncRNA downstream 193647 4055214 ~ 4112189 (-) True G151615
TU205452 lncRNA downstream 222155 4082918 ~ 4083681 (-) True G151633
XR_005641833.1 lncRNA upstream 19936 4334272 ~ 4337224 (-) True LOC120574176
TU205640 lncRNA upstream 97180 4411516 ~ 4413160 (-) False G151783
TU205642 lncRNA upstream 97180 4411516 ~ 4413160 (-) False G151783
TU205643 lncRNA upstream 97180 4411516 ~ 4413160 (-) True G151783
TU205629 lncRNA upstream 110176 4424512 ~ 4433861 (-) True LOC120575466
XM_039824650.1 mRNA downstream 2177 4215833 ~ 4303659 (-) True LOC120574358
XM_039824647.1 mRNA downstream 2177 4217336 ~ 4303659 (-) False LOC120574358
XM_039824648.1 mRNA downstream 4913 4215833 ~ 4300923 (-) False LOC120574358
XM_039824652.1 mRNA downstream 4913 4217336 ~ 4300923 (-) False LOC120574358
XM_039824651.1 mRNA downstream 4913 4217336 ~ 4300923 (-) False LOC120574358
XM_039824373.1 mRNA upstream 458 4314794 ~ 4324641 (-) True LOC120574171
XM_039823818.1 mRNA upstream 33636 4347972 ~ 4351094 (-) True LOC120573904
XM_039825390.1 mRNA upstream 41349 4355685 ~ 4358977 (-) True LOC120574889
XM_039826264.1 mRNA upstream 50152 4364488 ~ 4367343 (-) False LOC120575464
XM_039826261.1 mRNA upstream 50152 4364488 ~ 4367343 (-) False LOC120575464
unassigned_transcript_716 other downstream 275576 4030179 ~ 4030260 (-) True trnas-aga_11
TU205089 other downstream 988921 3311727 ~ 3316915 (-) True G151344
TU204921 other downstream 1390469 2911326 ~ 2915367 (-) True G151227
TU204905 other downstream 1409493 2873918 ~ 2896343 (-) True G151216
TU204751 other downstream 1706854 2596802 ~ 2598982 (-) True G151146
TU205621 other upstream 47512 4361848 ~ 4367333 (-) False LOC120575464
TU205622 other upstream 47512 4361848 ~ 4367333 (-) True LOC120575464
TU205631 other upstream 101841 4416177 ~ 4428301 (-) False LOC120575466
XR_005641996.1 other upstream 104390 4418726 ~ 4464991 (-) False LOC120575466
XR_005641995.1 other upstream 104632 4418968 ~ 4464991 (-) False LOC120575466

Expression Profile