RNA id: XM_039826285.1


Basic Information

Item Value
RNA id XM_039826285.1
length 3621
RNA type mRNA
GC content 0.52
exon number 17
gene id LOC120575475
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 3691446 ~ 3715227 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAATATTAAGTGTTGGCTACAGCAGTAACAGGAAGTTTGGACTAGTGAAGAGACATAATACTTTGGTTTACTATAACACAATAATAGGGTGTAATTCTTGTTTTTATTTCGGGACTTCCTGTCGGTTTATCTCCTGTATCTTTCTGTGGATGTTGTGATGCCTCTGCAGAAGATGATGACAAAGATGGAGCAGAGCTCGTGCACTGAGGATCGGATCCAGCATGTCCTGGAGCGTTGCCTATGTGGCCTGGGCCTCGACATTCCTGACAAACAACTCTGGAACGCCGGGCTGTGCATAAACCGCTGGTGTTTGGAGGAACTTGTGAAGAGAGATCCGCACAACTTCCTCATCCTTTTGCAGAAAATACTGAGGAAAACAAAGGAGGTGCTAGAGCAGTGTCAGTATGAGCTGGTGGTGCCCCTCAGTCTCCTGTTCTCTTCAACCCTCCTAAAGGCTCCTCATGTGGCTCCAGAAGTGCTCCAGGAAGCCCACCAGTTGTTCCATAGTTTCCTGGCCTGGCCGGAGCCGTGCAGCTCTGCCAGCAAACGCCTGCTGAATATCCTCCAGCAGGAGCTCCGAGCACCAGGTATTTCATTTCAAAGACTGGTTCGGACAGAGCACGGTATTTCCACTGAGATTAACTCCAGAACCATgACGGTGATGTTAGTGAGCCCAGATGAGGACGTCCCTCCAGAGGTCCAGTCTGTGGTGGAGCAGCTGAGCGGCACCGCGCCCTCCAGCAGAGACGTGGCCGTCCTCCTCATCGTGCACGGCTTCCAGGCAGCTCTGGGCACCGATCACGACCCGCAGGCGCTCCACACTGCCCTGCAGACAAAGCGTCCTGAGGAGCTGGAGCAGCTCAGCGAGGCTGTGAGCGACCGAATGGAGACAGCCGCCTCTACAGCCGGTCTCAGCGCAGCCAGACAAGGTCTACTACACAGCATGGAGAGGCTCAGAGAAAGCGTGGCCCTTCCTACTCCCGCTGATGGCTGCCTAGATACTgGGGCTGTGGAGACTTTCATGCTGCCCTTCCCCAAATGTCAAACGTGCTCTTGGGAAAACGACAACTTTGATGTTCTGAATGGCGTTCTAGAGTCCAACCTGGACTCCCCTCCAGACTGTTTCCTCAAAACAGAAGTGGAAGAGGACGATAACAACGACACCAGTGTGGATGAGGAAGACGAGTTGGAGGGGAACAAAGCGGACGACGGGCTTCAGAACCACCGCTTCTCCAGCGCATCCTCTTCCTCGAGGGACTCCGGCTACTCGCTCTTCTCCACCTGTTCCGCCGTCTCCACGCTGTCTGGCTCGTCGGGGGTGGAGAGCGACTTCAGCGAGGACGCAACACACGAGGACAAAGAGGACGGACAAGACAGCCAACCGAAGCTCAGGAAGAAACCCAAAAAGAAGTCCAGATCCATCTTAGGCGCCGAGCGCTTCTCGTCGCTTTTCAAGAGCCCCCGCAGCCCGAGCGTTTGCCGCCGGGCCCAGAGCATGGGCCACCATGGGGACTTTACCAAAGAATTTCACAGAACTGGCTCGCAGCTCAAGCACTCAACGACCGTGTCTAGACACGTTCATTCTCTGCATCCGTCCAACGCCACCCTGGATCCCCTCGCCCCCCGGAAGCACGTGTGCGTCCGCAGGAGGCCGATCCTGAGCTACCACGAAGGCGACGTGGCGGAGGTGCCCACCCTGCTCAAAGTGGTGGTGTTCGGAGGCGACAGAGAAGCCGGCAGGCTGGCCAGGGCGTACAACGacctgcagcagagagagagcagatttcCCCGACTCACCAAGACGTGCAAACTGCAGTTTTACCTTGTTCCCACCAAAAGGAGAATTACAGGAAGCCAGGGAGGACACACACCAACTGAGGGGCCGATGGGAAGTTCAACCAAAGCTGCTGCCGCTGTGGAGTCTAATGGCGGCATACTGGAGGACAGCTCCAATGATATCGCCCAGATGTTGGGCATGGTCGACCCCTGGTATGAGCGGAATGTCCTCAGCCTGCTCAGCCTGTCCTCGGACGTCCTTTGTCAGACCGCGTGTAAGGAAGGTGATGAGTCAGAGAGCAGTGGCAGCGTGGAGCGACTCCCCCTGTTGGCCGACATGGTGCTTTATTACTGCCGACATGCAGACCAGCCGGTTCTGGTGCAGCTCTACCAGGCCGAGctgaccctagctggaggagagaggagaagggaaGTGTTTATTCACTCTATGGAGCTCGGACACACTGCTGGAACCAGAGCTGTTAAAGCCATGGGTGCTGCCAGCAAAAGGTTTGGAATTGATGAAGAGCGGGAGGCTGTCCCTTTATCATTAAGGGTTGCCTACAACAAGGTGGCTGTTAGCGGGAGGAGCCAGTGGAAGCAGACAGAGATGGTTTGCACATCGATAAATCTTTACAAAGCCTGCAGGAAACCTGAGCAGCTAGATTCAAGAATAGAAAGCCTGCAGCTGGCAATGACAGAAGTCCTGAAGAGGCAGTGCTCCAAGTCTAAAAAGGGCTACAATCAGCACATCTCCGTCTCAGAGGTGAAGGTGGACAAGGTGCAGGTGAACGGCGGAGACGATGGGACAACTTTTGCCGTGTGTCTGGATCAGGATGAGAAGAAGTTCATCCAAAGTGTCACCAGGTGTGATGTGTCTCTGTGCTGTAAACCAGGAAGCGGTTCAGACTGGAGGTCCTACAAGCCATCGCCTGGCCAAGTCCAGCCTCTGCACCCGTCCTACTGCTCTCTGCTCTGCCTGCCCATCACCTCCTTCACCGCCTCATTTCCCTGACACACTTTTTCCAGCCTGGTcgcacagaattccgtgaaatgatcacgaatcgttaacagcgcattacgtggtggtggcacggaacGTGTGAAAACTCTGTGTGGctaaaacaatgccaatgtgaagtcaatgagaagatgacgtagcgtTAAGAGCAACTACGGTAGGGGGGGACTATGTAAGACCGAAATTCCGCttaaggaggttggttgaggTGATGGATCGGTCAatattcttccgtgggcccatcacgtaATGTTTTTCGATTCCGTGAAACtaccacagattttgagttaaggggccgtgttcatttcaccgaattctgtgagatcaggttgactTTTTCACCACTCTGAACGAATCCACTGGATGTTTAAACCCAATCAACACGGGATGCAGAGTACAGATATTGAAAAGGTTGTGAAAAAGGAAGGAgagaacagtaaacagtaatGGTGCGTGTCCACTGGCAAGCGCCATTTCCACGTTTTCCATTCATTGTCTACGAAAGCAGTcgggcaatgcattctggtagcgtcgCTGTAAAAGTATTGAGTTTCGAGTTGTCCGCTTAAAGTTTAAtccatcagtggtggaagaaggaTTCAGATTCTGTActtaaagtactaataccacactgtaaaaattctctgttacaagtaaaagtcctgcattgaaaatgttagtaTCATCAGGGAAATGTACTTAATGTATAAAAAGTAGAAgtagtcaatgcagaaaaatcctcctattttagaaactggaaatgatccaaccagttgtgtgtttaatggtctaatctttgcagctggacttgtaggccgttata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205300 lncRNA downstream 40179 3609156 ~ 3651267 (-) True G151521
TU205291 lncRNA downstream 168656 3522352 ~ 3522790 (-) True G151515
TU205149 lncRNA downstream 310781 3375879 ~ 3380665 (-) True G151399
TU205148 lncRNA downstream 311908 3379186 ~ 3379538 (-) True G151398
TU205124 lncRNA downstream 364079 3327144 ~ 3327367 (-) True G151376
TU205351 lncRNA upstream 251883 3964048 ~ 3964411 (-) True G151561
TU205425 lncRNA upstream 343049 4055214 ~ 4112189 (-) True G151615
TU205452 lncRNA upstream 370753 4082918 ~ 4083681 (-) True G151633
TU205459 lncRNA upstream 418639 4130804 ~ 4165498 (-) True G151639
TU205520 lncRNA upstream 556165 4268330 ~ 4268654 (-) True G151691
XM_039823709.1 mRNA downstream 2047 3669819 ~ 3689399 (-) False pik3r6b
XM_039823708.1 mRNA downstream 2047 3669819 ~ 3689399 (-) True pik3r6b
XM_039826290.1 mRNA downstream 24991 3661111 ~ 3666455 (-) True mfsd6l
XM_039823897.1 mRNA downstream 35386 3643493 ~ 3656060 (-) True zgc:171844
XM_039825575.1 mRNA upstream 257628 3969793 ~ 3972398 (-) True mchr1b
XM_039823638.1 mRNA upstream 498981 4211146 ~ 4214095 (-) True LOC120573799
XM_039824650.1 mRNA upstream 503668 4215833 ~ 4303659 (-) True LOC120574358
XM_039824648.1 mRNA upstream 503668 4215833 ~ 4300923 (-) False LOC120574358
XM_039824647.1 mRNA upstream 505171 4217336 ~ 4303659 (-) False LOC120574358
TU205089 other downstream 374531 3311727 ~ 3316915 (-) True G151344
TU204921 other downstream 776079 2911326 ~ 2915367 (-) True G151227
TU204905 other downstream 795103 2873918 ~ 2896343 (-) True G151216
TU204768 other downstream 1092464 2542429 ~ 2598982 (-) False G151146
unassigned_transcript_716 other upstream 318014 4030179 ~ 4030260 (-) True trnas-aga_11
TU205621 other upstream 649683 4361848 ~ 4367333 (-) False LOC120575464
TU205622 other upstream 649683 4361848 ~ 4367333 (-) True LOC120575464
TU205631 other upstream 704012 4416177 ~ 4428301 (-) False LOC120575466
XR_005641996.1 other upstream 706561 4418726 ~ 4464991 (-) False LOC120575466

Expression Profile