RNA id: XM_039826293.1


Basic Information

Item Value
RNA id XM_039826293.1
length 2541
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC120575481
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14476834 ~ 14479374 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATCCACTGAgtgcacactaacacacagaggaggaagggtgtgtgtcttgtgtgagTAAGAAAGAGTGGGAGACCAAATCCAAAAGGCAAAAGGAGACAGAAACAGCAAGACAAAGAGCAAGAGACAGAGCCAATATTTTTGAGTGATTTTGACGGGCAGTAAAGGGCCTACAGTGAAGAAATTACAAGGATCAAGTCACTGTGTAATGGAACTTGACTGAGAGGACAACAAACTAGTCCACCTGTTCTGCACACAGGGCTATTGTTGGAAGATTGATCTCTGGATTTGACTTTTAGAGGACCTAACTCCACTTTGAACTTTTTGATAAACTGGACAACTCGGTAATTGAAGACAGTAAGCAAGCGAAAACCAAGATTTCTGAGGACATACTGTACACTACAGTTTTAAGTAAGAACAGTATACAATTTTAATCTCTAAACCTAAATCCTCTAAactaaatttttttaaacactataaAAGGACTGATACTGTatgatttacagaaatgttactCTGTATGCATAGTTTATAGACTTGTGCAGACAAGTAGAGACAATACTTCAGACACAAAAGAAAAATTCAAAATATGTCTTATTTAAAGGTctaattaaatgtaatttactaTTACAAGCTACTGTACAAACTTCTACAtaacagtgtatgaatgtaacTTGATCTTAAGCACACTGCTATAATTACAAAGCAAGCTCAGGGAAGAATTACAGACATTTATAATTAAGGCCAATCTATAAAAGGCAACCAAGGAGAGGGTGAGGTCTGTGACGGGGAAAAAAAGTTGGCCACaaggacacaaagacacaaagaacaGGACGTCAATAATCtcacaaaaaaacagctgcTGTAGGGAGACAACACGCACCATGGATTCTCACGGAGGACACTACCTCAACAAAGAAGCTGTGCTGTCACCTTTAGGTGCAGCCCGAATGTGCCAACTGCTACTCGGTTGCACCATAATGGCCCTTGTGTCCCACAGCGCAGGCTACAGCGCCTCCTACGGACATTTCTGCATGTTCGTGTGGTGCTTCTGCTTTGCTGTCACACTGATTGTGTTCACCTTGGACATCACGCGGCTCCACACATGCATGCCCATTTCCTGGGATAACTTCACTGTGGCCTTTGCCATGCTGGCAACACTCATGTACATCACTGCCTCTGTGGTCTACCCTGTTTACTTCCTCCAAACAGAGTGCCCTGATGAGGGCTGTGAAGTCCAAATGTACCGCATTGCTGTCACTGTCTGCTCCAGCGTCTGCTGCTTTCCCTACGGTGCTGAGGTGTTCCTAACTCGAGCCAAGCCGGGAGCTGTGGTGGGTTACATGGCCACTGTGTCCGGTCTACTCAAGGTGGTCCAGGCTTTTGTGGCCTGCATTATTTTTGGGGCCCTGGCCAATGACAGTGAGTACACCCTCTACATTGCCACCCAGTACTGCGTGGTGGTGTACAGCCTGTGCTTCTCTATCACCGTGATAGTGGTCATACTGACAGTTTCTGGTAGGACCTCTGCCCTGCGGTTCCCCTTCGACCGGTTTGTGGTTGTCTACACCTTCTTCGCTGTGATTCTTTACCTCAGTACTGCACTGATCTGGCCCATCTTCAGCTTTGACAAAAAGTATGGCAACACTACTCGTCCTGAGGACTGCCCACGTGGAGAATGTCCATGGGACAGTAAGCTAGTGGTGGCCGTGTTCACCAACGTCAACATGATCCTATATTTTGTAGACCTTGTTTACTCCCAGAGGATTCGCTTTGTCTCCAGCTCTGCTGTGTAAAAAAATGTACCCCTCTAAAGACTGTTGAGATTTAAAGACAAATAGAGAATCGTTGAGGCCACATCCACAATGCTCTACACAGTCAGGTCTCTGTGAAGGACTCATTCCCTTGGATCCATAGATTCATGGTGTCTTATCTGTATTGGATTTTTTAATATCAGTATTTATCACCTGTAAGCAGCAAAACTGACAGTATTACCCTATTCTACAAACTTAAAAGGCCTTTCCCCAGTTCTACAGTGACCTACCAGGAAGAGACTGCCAGGTGACATCCCTCTGCTCCAGATTCCTTTGGTGGTTGCCTACAGAACAGACCTATGGGAGTATGGGATAATGTTTAGAATATCAAAACAGTGTTATGTCAGTCAGAGTACAAAtgcaatttatttatgtattagtATGTATTAAAATGGATGTAAACACTAAAATGGATGAAGATATATCACAGAGATGAATAGCATATGTTAAGTCTACAAGGTATGCACTGAACATAGCTTTTGGTTTCGGCTTTCCTGccattttgctgttttttttccccacatctTGTTCTTATATAGgctatgtaataataatatgaaaaataataatattgaagTTCATTAGGAGTTTCCTGCCATCCATTGAATGTTAAATGTGTTGGATACATGGATTTCTTTAAAGGCAAAACTTTGACAGTATCACAGTATTTTATTTGGGAGAAGCACAATCATGTAGTAGAATATCATTGCTTTTGCTATATTTCTGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209899 lncRNA downstream 19798 14455062 ~ 14457036 (-) False LOC120574967
XR_005641944.1 lncRNA downstream 139760 14330945 ~ 14337074 (-) True LOC120575037
TU209820 lncRNA downstream 149898 14325973 ~ 14326936 (-) True G154825
TU209781 lncRNA downstream 377553 14078514 ~ 14099281 (-) True G154788
TU209938 lncRNA upstream 46760 14526134 ~ 14529119 (-) False cenpx
TU209980 lncRNA upstream 148376 14627750 ~ 14664671 (-) False G154948
TU209984 lncRNA upstream 153804 14633178 ~ 14636802 (-) True G154952
TU209985 lncRNA upstream 160728 14640102 ~ 14647069 (-) True G154953
TU209979 lncRNA upstream 182674 14662048 ~ 14664671 (-) True G154948
XM_039826079.1 mRNA downstream 1044 14472095 ~ 14475790 (-) True pycr1a
XM_039825500.1 mRNA downstream 5404 14454837 ~ 14471430 (-) False LOC120574967
XM_039825499.1 mRNA downstream 5609 14454837 ~ 14471225 (-) True LOC120574967
XM_039826316.1 mRNA downstream 25179 14441803 ~ 14451655 (-) True LOC120575491
XM_039826317.1 mRNA downstream 25182 14441803 ~ 14451652 (-) False LOC120575491
XM_039826292.1 mRNA upstream 1963 14481337 ~ 14488923 (-) True notum1a
XM_039823675.1 mRNA upstream 46752 14526126 ~ 14529153 (-) False cenpx
XM_039823674.1 mRNA upstream 46752 14526126 ~ 14529008 (-) True cenpx
XM_039825840.1 mRNA upstream 50064 14529438 ~ 14532650 (-) True LOC120575183
XM_039825540.1 mRNA upstream 54308 14533682 ~ 14543994 (-) False LOC120574989
TU209766 other downstream 419522 14050738 ~ 14057312 (-) False med9
XR_005641817.1 other downstream 1054883 13335449 ~ 13421951 (-) False prkar1b
TU209391 other downstream 1497149 12973332 ~ 12979685 (-) False sun1
XR_005641885.1 other downstream 1504024 12956522 ~ 12972810 (-) False iqck
unassigned_transcript_848 other downstream 1633860 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641939.1 other upstream 55597 14534971 ~ 14543992 (-) False LOC120574989
TU210021 other upstream 310682 14790056 ~ 14790778 (-) False LOC120574213
TU210042 other upstream 316652 14796026 ~ 14828220 (-) False LOC120574214
TU210040 other upstream 372565 14851939 ~ 14857557 (-) False LOC120575102
TU210041 other upstream 372565 14851939 ~ 14857557 (-) True LOC120575102

Expression Profile