RNA id: XM_039826298.1


Basic Information

Item Value
RNA id XM_039826298.1
length 1514
RNA type mRNA
GC content 0.49
exon number 7
gene id polr3h
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5360457 ~ 5366750 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCGCACTGTCGTAAATAATCACGTGGAGACATCATGGATGCTCCTGTGAGTTTGCTGTAGATTGTTATACCTTACCTGTAGTCTTTAGCTCGATTTTGAACATTTgttgataaaataaaattcatctCCGCTGTGGAGAAACAAGAAACGCTGTCCTGAAAACAGGCGACACCTCCCAGCCCAGCTGACAGTGCGGTCCGGTTGTTTTACCACagcagctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacattatgtgtgtgtaagtgagtaGATGCTCACAGAGTGTAGTCTGCATCATGTTCGTGTTGGTGGAGATGGTGGACACGGTCCGGATCCCTCCGTGGAACTTCCAGAGACAACTCAACGACGCCATAGCTGAGGAGCTGAACAAGAAACTGGCcaacaagGTGGTCTACAACGTTGGCCTGTGCATCTGCTTGTACGACATCACTAAACTGGAGGATTCCTATATATTCCCGGGGGACGGAGCCTCACACACCAAAGTTCATTTCAGGTATGTGGTTTTTCACCCATTTCTCGATGAGATCCTGCTCGGCAAGATCAAGTACTGCAGTCAAGAGGGAGTTCATGTGACCATGGGCTTCTTTGATGACATTCTCATTCCACCAGAGTCACTTCAACAGCCTGCAAAATTCGATGAAGCCGAGCAGGTTTGGCTTTGGGAATACGAGACGGACGAGGGGGCCCACGATCTCTACATGGACCAGGGAGAGGAGATCCGATTTCGGGTGACCGATGAAGTCTTTGTGGACACGTCGCCGACGGGGCCGGCCGCGGCGGCGACGGACACGCCGGCTCAACCGGGACAGTCGACGGCGCCGCCCCCAGAGGACAGCGGGGAAAAGAAAGAGGCCCCGTACACTCTGATTGGGACCATCTGTGACCCGGGGCTGGGGCTGCTGTCATGGTGGAACAGTTAGcgctgaagaagaagaagaagaagaagaagaagaagaagaagaagacgacatTTGGTGGCAACTGACAGCTCGACCATCGTGACGAGAGACGGCCAGCTGGAGACACAGAACCCAGGACGTTGGTACACAAGTCAAGACACAACGTCGAGCAGCTCCCTGAACCAAGATGTGATGTCACATTGAGactgattgttgttgtttttttataatactGCCCTGAACACGCCAGCTTCATGTGTACATATGTGAAATTGACCCTACAGAATAATTCAATGGACATTTGGTGAGATTTTGACCCCCAATTCAAAAGAATTAGGCCATTAATCATTTGAATCTCAACGTCATCACTACTTTGGCGTGACAGTCGGACATACACAGGTTATAAAATCTGACGTAAATGGCTCAAAGTAGGAGGTGTTGAACCCTGAGCAGCATCTGTCAGGGATGAAAACGATGTGGCGCCTAACGGtccgtgtaacgcttatcagttcaattttctaagaaCAAACGgatatttggaaaaacagaaaaatgggttcaaatatcaat

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206047 lncRNA downstream 70096 5287858 ~ 5290361 (-) True G152081
TU206013 lncRNA downstream 189805 5170304 ~ 5170652 (-) True G152052
TU205857 lncRNA downstream 336365 5013517 ~ 5024092 (-) True G151951
TU205827 lncRNA downstream 467139 4869887 ~ 4893318 (-) True G151924
TU205683 lncRNA downstream 594964 4761732 ~ 4765493 (-) False LOC120574081
TU206072 lncRNA upstream 23755 5390505 ~ 5395115 (-) True G152104
TU206076 lncRNA upstream 79753 5446503 ~ 5448057 (-) True G152107
TU206259 lncRNA upstream 141967 5508717 ~ 5509392 (-) True G152233
TU206282 lncRNA upstream 216629 5583379 ~ 5585169 (-) True G152249
TU206284 lncRNA upstream 216629 5583379 ~ 5587735 (-) False G152249
XM_039825701.1 mRNA downstream 1626 5350169 ~ 5358831 (-) False LOC120575093
XM_039825700.1 mRNA downstream 1626 5350169 ~ 5358831 (-) True LOC120575093
XM_039825696.1 mRNA downstream 33787 5309600 ~ 5326670 (-) True gucy2ca
XM_039825689.1 mRNA downstream 78816 5276220 ~ 5281641 (-) False LOC120575084
XM_039825691.1 mRNA downstream 81176 5276207 ~ 5279281 (-) True LOC120575084
XM_039824432.1 mRNA upstream 315 5367065 ~ 5384844 (-) True LOC120574211
XM_039826068.1 mRNA upstream 32273 5399023 ~ 5413979 (-) False tefb
XM_039826067.1 mRNA upstream 32273 5399023 ~ 5407934 (-) True tefb
XM_039826073.1 mRNA upstream 49387 5416137 ~ 5437363 (-) False LOC120575348
XM_039826072.1 mRNA upstream 49387 5416137 ~ 5437279 (-) False LOC120575348
TU206002 other downstream 133216 5178316 ~ 5227241 (-) False G152043
TU206003 other downstream 173416 5179064 ~ 5187041 (-) True G152043
TU206001 other downstream 176802 5179064 ~ 5183655 (-) False G152043
XR_005641996.1 other downstream 895466 4418726 ~ 4464991 (-) False LOC120575466
XR_005641995.1 other downstream 895466 4418968 ~ 4464991 (-) False LOC120575466
TU206084 other upstream 95096 5461846 ~ 5464418 (-) True G152114
TU206270 other upstream 182568 5549318 ~ 5554250 (-) False top3a
TU206279 other upstream 207930 5574680 ~ 5613668 (-) False atp5mf
TU206260 other upstream 213618 5580368 ~ 5582861 (-) False bud31
TU206278 other upstream 243806 5610556 ~ 5613668 (-) False atp5mf

Expression Profile