RNA id: XM_039826321.1


Basic Information

Item Value
RNA id XM_039826321.1
length 4648
RNA type mRNA
GC content 0.48
exon number 7
gene id si:dkey-110g7.8
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6073542 ~ 6081964 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACAATGTACGGAAAAGTGGCGTCATCGCCCTAATTGCTCTTCAGTTGTTGGTTCGAAACAGCTGCGACGCTACAGACTTAAAACAACGCCCCAGTCCGAAAGTACGTCAACAAAACGTTATGAATTGTATCAATATggttatttttattctttaaagTGCGTACaactaatgtttgtttttaaacgtgATTTTGCTTGGGTCCGTGAATGTATCCCGCCACACAGCGTACATGATCAACCTGTTAAGGAGCCAAGGATGGGCTCAGACGTTCAGGAtgattttttatcattttttgaGTTCAACATCCTTCAGAAATGACTCACATTTTGATGACAGTGCTTGGAATTCAATGCAATTAACGCCATCTGCTATTTATGGGAGCTTTCATGTATTATTCTGCATACGGTgccacgctgctgctgctgctgctgctgctgtgtgataCAAGCGAGTGGGAGGAACAGCTTCCTCTGTTTTACCTAAGAAAAATGACGAGACGTCTTCGTGGAACTGCTGCAGCAGAGATAGATTTGGCTTACAGTCTCCTGCATTGCACAATCTTTCCCCTCTGCTTGGCcagataaataaaacaaaagacgGAGCATAGGGAGACGAGGAAAAGGGGAGAGAAGCTACAGGGTAAAGGACAGAAAAGAGCCATAGTGGGTAGAGGGGGTGTGGAggaaaacagatttaaaaaaaaaaaagagagagagaagagagggggagaggttGAATGGCAGAGGAGGTatgaagagagaaaggaaggcAGGGGTAgaaacagagaacagaggataGAGTGAGTAACACTGCAGTAGAATGAGGGttagagtgaaagagagagccAAGAAGCATTTGAGCTGCCAGCCTTTCGCACGCCACTCAGGATCCATCGCTTTCTGAAGAGGCAAGAAGAGGAAGCCACCGTGGAGgcgagaaggagaaggaggaggggggctgaggaggaggaagccAGAGGTTCTACACACAAGATGGCTGCTGTGTCCTCTGCCTCTGACACTGGGGACCCCAGGGGCCGACACCCCCCTGAGCGCAGGCTGCTGATCCTGGGGGGACCACAGTCTGGTAAGACCTCCACCGCCAACAGCATCCTGGGGGATGAGGTCTTCGACGTTGGGACAGAGACCACTCACAGCAACGTTGGCCAGACGGAGATCTACGGCCGACGGGTCACTGTGGTGGACACCCCGCCGTGGGCCGTCCCCGGTGACCCAGAGGACAACGCCGAAGCTGACAACGAAGACAATGCCGGCGCCGAGTCGGACAACCCGCCACGGGCCCCGCAGAGCCTGGACAGCGAGGGGCCGTGCATGGGGGCCATTCTCTGCCCTCCTGGGCCCCACGCCATCCTGCTGGTGGTGTCGGTCACCCAGCCCTTCAGCGAGACGGAGAGGAGGGCCGCAGAGGAGCAGCTGGGGGCCCTGGGTGGAGGGACCTGGAGGTACTCCATGGTGGTCTTTACCGGGGTGGACAAGCTGCCCAAAGAGGTCTTCATTGAGGAGCACATCGAGAACACCGGAGAGTCCCTGCAGTGGCTGGTGGAGAGATGTGGAAGCAGGTACCACGCCTTCGATAACACTCGGAAAGACACAGAAGACAACACACAGGTACCCGAGCTGATGGAAAAGGTGGAGGAAATGATCACTGACAACCAAGGCTGGTACTTTGAGGTGAACGAGTTGATTTTACTGGAGGAGGAGCAGGCCAGGAGAGctctggaggaggagaggatgagGATGGAGGAGCACGCCAGACAGAGGGACCAGATGATCGGAGGACCTCCCagagAGTTGAGACTGCTCTTGTTAGGCTGGAAGGGTGTCGGAAAGAGCTCGGTGGGGAACTCCATCCTAGGCCGTCGCTACTTTGAATCGGGCCAGGAGACGGAGCTGTGCCTCAGGAGGCAGGCGCTCGTATCCGGCCGTCGGATCACAATCGTCGACACCCCTGGCTGGGATTGGTTCTCGGTGCGGCGGACCCCGAAGCGGATCCGCCAGGAGTCCCAGCGCGGCGCGGCCCTCCTGCGACCTGGACCCCACACCCTGCTACTGGTCCTCCCCGTCGTCTCGTCGCTCACCGCCAGGAAGAGGCGGACGCTCCTGGCTCACATAGAGACTCTGTTTGGTGACAGCGCGTGCCTCCACACCATGGTGCTGTTCAGCTGTGGCGATTGGCTGGGCCGCACGCCCATCGAGGAGCACATTCTCCGGGGTGGGAGGGAGCTGCAAAGACTACTCGAATACTGTGGGAACTATTACCACGTCCTGGACAGTAAGATACCCGGCAAGGACAGGAGCGTGTCAGTCCTGCTGGATAAGATGGAGGAGATGATCAGAGAGAACGGTGACAAGGCCTTCCTCCCCATACAGACAGAGTGGTTGAGCGAGGACAGCTCTTACTCTTCTGACAACACCGAGCCGGAGGATGACTGTCGAGGATGCCAGCTACAGTGACACGATGGCACTTAAAGGAAAGTGGTCCAGCTTTTCATCCACGAGTCTTCTTCAACAGGCCCAAACGCCACCTCGCGTTACTTAAACCTCATCTAGATACAGTATCTCGCTCTAACTCCAAAGAGTTTTAGGGGAAACAAATGGCTTGGAACGGGGGAGTCTCGCCACGATCAGCTCTTTGTTAGAAAGGCCGAACTGATCACTGAGCAAAAGGGCCAAGCTGGACTGAAAGTGCAAACTCTCCTCAAGAGGAGGGGACATATTCTGCTTTTGCTTCAAGGGATCAGAGATTGATTCCTGTTCGTGAGCATGTACACAGATATCATAACTGCTGCTATAGAGACCCTGTTTTAACACTGCAGAGTAAATACTTACTCGTCATTGTAACTATGCGTTCAGACCACTCTGATACAAGTTGAAAGCGTAAAATCAAAACCAAAAGAAGACAGATTTGGCGGTAGGACTCACGTCTGCAGTAGGTGTCACTCTTGGTTATTGTAAGCAAGAGGACTTAGAGTAAGttctatatataaatatatatgactTGTACCATGAATTTGGACGATGTTTTAAAATATAGTCATCCCCTTCTACATTAAGTGCCATTTTTGTCATTCACTTCAAATTAGTTTGGTTCAAAAAAGGGTTCAAAGGAAATGGTGTGAGTAAAAGCGACCGATTGAATACCAAACCGGCAGTGGGACAAAAGATAATAATGTTTACTGTAATGTGTGCactcaaatgtaaaaaaaattaaaataaaacgaGTTGTTTGTGCACTCCAGTATCATAAAAAGTACACATTCAGACATGAGTGGTATTCAAATTCTGGTCATTAACATTTGATTAGTTTCTGCTCAGGGAGTCAGGGTTGAATTTGCTTCCTCCAGGGCAAAATCTGGTACATTTACAGAAACGCTGATTAATGCCGATTGCTAAACAGCAGACGTAAGTCACATATTAATACAGAGTggagtttttttattattattattattatttcagcaTTAGCTTTGGTTTGCTGGAAGTAAAAGAGAGTCAGTGTTTGCACTTTGGTTGTAATTGGTTCCTTTggttctctaaaaaaaaaaactaaattgaatCCATTTACAGACGTAAATGTAGTCATTCTGAGCCCACCTCTGCCGTAGCATCCAATGTTGCGAGCTGCTCAGAACAGTTACAGGAAAGGCCGTATTGAAACTGTGTGCAGTCTCAGATCCCTGCGGAGCAGCTCGGGCTGGCTCCGCTTCGCTGTCTGTGGTCATGCATCCAGCGCATTTATCGACAAGGTAGATTCAGCTACGTGCCTCAGCATCAAAGCGGGAGAGTGGGAGTACTGTACAGGCCTGCGGCAGGGCAGTATCCTATACGCTACATCAAGCTTTCGCATGCTACAGAAACAACATAACCTCATGAACCATTTGAGCTCACATACTGTAGGGCTTTTACTACCTTTTTCTACATCAGTGAGACATCTGTTCCTGACATCAATAGCGATGTTTTGAAataattcaaatatatatatattcagctCTCAGAGGCATGTTAAGACAACGCATGCAGATAAACGAGTGCCTATAGAGTTGAAGGCAACCTCACTTCTTATTGCTCTGACTCTTGCTTGAGCAAGTCTGTGTGAATTTCTGCTGACATTACATCCCTCTACCTTTTTTgactgcaaaaaaagaaaaaagaaaagacaaaagtaCCCACTCTGAAAGGTAAAAATCAAAGCATATATAATATGTGACCGATACCACTGCCGTGctgtaaaatgttattttctACCAATGATGTAGCCTATAAAAGGAACCCCAACACTGCTTCCCATATGCTTCACTGACTCTGTGCTTCATCTAGTGATGTAGGATAGCCTACCGCAGCACTTTGTGTGACAAGCATGACTTTACAATTTGATATGAGGATGTTTCAgacattcatttggagtcttAGAGTCCCACTTCACCTGTGAATATGTTGTAGAAGCCGTGTATATTTGCAGTGTCAAACATCGTACGCTTTTAGCGAAGCATTTTGCACTGTGTAAGTTCTACCACTTTAGTGTGGCCAAAGTGATGTTACTTCCTGTGTGGTCCTTCCCAAATGGTGATTGTATCATCAGTACTTTGCTCATCGTCAGACAATAATAAAAGATATGGATATATTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206417 lncRNA downstream 62691 6009247 ~ 6010851 (-) True G152362
TU206416 lncRNA downstream 78618 5991945 ~ 5994924 (-) False LOC120574101
TU206379 lncRNA downstream 124047 5949277 ~ 5949495 (-) True G152330
TU206378 lncRNA downstream 124523 5948814 ~ 5949019 (-) True G152329
TU206347 lncRNA downstream 199234 5873777 ~ 5874308 (-) True G152302
TU206467 lncRNA upstream 27794 6109739 ~ 6109942 (-) True G152400
TU206470 lncRNA upstream 29787 6111732 ~ 6111935 (-) True G152403
TU206473 lncRNA upstream 38503 6120448 ~ 6120667 (-) True G152406
TU206482 lncRNA upstream 64880 6146825 ~ 6148812 (-) True G152414
TU206490 lncRNA upstream 72929 6154874 ~ 6155100 (-) True G152422
XM_039826320.1 mRNA downstream 19765 6044198 ~ 6053777 (-) True napsa
XM_039824187.1 mRNA downstream 64943 6006526 ~ 6008599 (-) True mpst
XM_039824184.1 mRNA downstream 69542 5995852 ~ 6004000 (-) True LOC120574102
XM_039824186.1 mRNA downstream 69546 5995852 ~ 6003996 (-) False LOC120574102
XM_039824183.1 mRNA downstream 78353 5991937 ~ 5995189 (-) True LOC120574101
XM_039823671.1 mRNA upstream 73354 6155299 ~ 6169024 (-) True csf2rb
XM_039823670.1 mRNA upstream 73354 6155299 ~ 6169018 (-) False csf2rb
XM_039823673.1 mRNA upstream 73354 6155299 ~ 6169018 (-) False csf2rb
XM_039823669.1 mRNA upstream 73354 6155299 ~ 6169018 (-) False csf2rb
XM_039823846.1 mRNA upstream 147418 6229363 ~ 6244419 (-) True baiap2l2a
TU206279 other downstream 459874 5574680 ~ 5613668 (-) False atp5mf
TU206278 other downstream 459874 5610556 ~ 5613668 (-) False atp5mf
TU206260 other downstream 490681 5580368 ~ 5582861 (-) False bud31
TU206270 other downstream 519292 5549318 ~ 5554250 (-) False top3a
TU206084 other downstream 609124 5461846 ~ 5464418 (-) True G152114
TU206522 other upstream 100463 6182408 ~ 6228114 (-) True G152441
TU206683 other upstream 637839 6719784 ~ 6720643 (-) True G152567
XR_005641918.1 other upstream 2000193 8082138 ~ 8100398 (-) False LOC120574885
TU207167 other upstream 2359234 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 2649452 8731397 ~ 8733019 (-) True G153172

Expression Profile