RNA id: XR_005641887.1


Basic Information

Item Value
RNA id XR_005641887.1
length 2059
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC120574707
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12931733 ~ 12938664 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacctcctaaaTATAGGGTATTTTCTTAATATCACTGTCACAGGCTGGAGACTACGCACATTTTGGACTCGTGCTTCTCCAGATCCTACTAGTTCCAGTTTGCGGCACTGGTCTAACCAACAGGGGCAAGTTCAATGTTTGATCCCTTCAACATGTGGACAGAAGTCAGAAGAAGCCATGGATTGAACCACATACCCTGCTATCAATGGAGGGTCTGCTgagccacagcagcagcaacagaaccAATGACCACTTCATCCCATTCCAGGCCCTAACCTCTCGAGGTCTTGTGTTACCTCCACCCTCATGCACAATCACCCAACCAAGTGGAAGCTGCTTTCTGGGGTGGGGCAGAGTTTGAGACGGGTGGGGTGACTGCAGAGCCCTGTGTCCGTGAAGTCCTGAAGAGAGAAAAGATTGGGGACATGGATTTTTACAGGATTTACAGGATCATAGGCGTGCCTCCACTGATAGCAGAGCTCTCATTATACATAGCACGAGACTCCTTCAATCTGCCTTCCACGGTCAGACATACTGCTAACCCCCTGCGTGGATTCagacaccacacagacagataatCCCTCCTAAAGTCTGCAATTTGATGTTGCTCCCCCAGATGAACAAGACACATTAGCATGTATGTGTTATGCATACATACAAGCATtgacgcacactcacacacaaagggTGGGGAGGATTTGCGATCACAGCATGCAACTACTTTTTTGGGTTTGGGGAGAGTAAAGGATTATTGATTTAGGACACTGGCCAGATGTACCCATATGCCTGACACAGTGCAGTAAAATTCAACTATTTGCAGCAATCTTGTCCAGCAATGGCATCATTTGATTTGTGTAGACTGAAAGGTTTTACAATGAGTGCTTTCACTTCCCACTATCAGTAATGGCCTTGCTAATGTTTTTCTCCAGGGCCTTTTCATTCACGTCTAATATACTGTAAGTCCATCAATCTGTCCATACAATGACTGACTTCTTTTCTGTGTCAACATAAAAAATCCCAGGTCTCTTGCTCTGTCCCTGCTCTTCATCTACAAGCCATTTTCCATCTCTTCATCTCGTTACTTTCTCAGCCTGTCAAACACCTCTCACTCTGCCCCTTTTTCCCCTCTCCTGCTATTTTCTTTCCCCTTTTAGCATTCACATCACATCCTTGTCTCCCCATTTGGTCAGAGTTTAGGTTTGATTAAGGGAATAGAATCAAACTGATGCAGTTGCTCTTTGATATTTAAGTGATATTCTGAATCAGCAGCTCAGAGCACATGAAGTTGAGCTTCTACCTTGCTCAGTGTGTTTACTGTGCGCCTCTGTGTATATGTAAGATTGAGCATATAAATGGAGCTGGCAGGACCACAGAGCAGGACCAGACTCAGAAAGGAAGGAGCTCCACTCAAATTAATCTCCACTGGACAGCCCAGTAAAGGAGCAGAGCCATTTTTGGGAGCAAGGAGCCATCTCCTAGGTGAGTGCCATGGCAACAGCCAACGTGGGCCCCAGCTCTCAGAGCTGTCCTTTTCAAGCTTCCGATCAGAAGTGGCAGGCCAGGTTTTTTGTTATGTGGCgtctcttactctctctctctctctctctctctctctctctctctctctcttgcccaTTATTCTgcttctccttttctcttcctgCATGACACGGTCCTGGCCTTGTTCTTATACAGGAAGGCTGTGAGAAGACTGCAGAGGGAACTGTCTGTGGGAAAATGTTGCCAGACAACACAGGGGTATGTGACAGTGAGTGCAAGCAAATAAAGGGACAAAAAGGGGAAATAAGACTAGATGAGATAGATTGTCAGAGCTACATTTGAAACTATGAGAACTGCAGATTTGATGCTTTGCGCATGCTTGAAAATGTCCATGTTTTAACACGGCAGATAACAGAAATAGAAGAGCCTTTACATTTAAATCACCATCAGAATTAAATAACTTTCTCAATCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209363 lncRNA downstream 414 12874360 ~ 12931319 (-) True G154517
TU209269 lncRNA downstream 150288 12779015 ~ 12781445 (-) True G154446
TU209257 lncRNA downstream 161611 12769409 ~ 12770122 (-) True G154438
TU209256 lncRNA downstream 163130 12766698 ~ 12768603 (-) True G154437
TU209226 lncRNA downstream 194270 12735503 ~ 12737463 (-) False LOC120575506
TU209356 lncRNA upstream 8535 12947199 ~ 12953388 (-) True G154515
TU209510 lncRNA upstream 314260 13252924 ~ 13253206 (-) True G154600
TU209511 lncRNA upstream 315809 13254473 ~ 13254773 (-) True G154601
TU209628 lncRNA upstream 650860 13589524 ~ 13631836 (-) False tfap4
TU209669 lncRNA upstream 717354 13656018 ~ 13692471 (-) True G154713
XM_039825072.1 mRNA downstream 14394 12902581 ~ 12917339 (-) True gpr139
XM_039825367.1 mRNA downstream 53519 12874376 ~ 12878214 (-) False LOC120574878
XM_039825366.1 mRNA downstream 53519 12874376 ~ 12878214 (-) True LOC120574878
XM_039825368.1 mRNA downstream 53519 12874380 ~ 12878214 (-) False LOC120574878
XM_039825364.1 mRNA downstream 68148 12861352 ~ 12863585 (-) False si:ch211-139g16.8
XM_039825073.1 mRNA upstream 16310 12954974 ~ 12972829 (-) True iqck
XM_039825075.1 mRNA upstream 16310 12954974 ~ 12972821 (-) False iqck
XM_039825076.1 mRNA upstream 16310 12954974 ~ 12972817 (-) False iqck
XM_039825077.1 mRNA upstream 16310 12954974 ~ 12972809 (-) False iqck
XM_039825074.1 mRNA upstream 16310 12954974 ~ 12972782 (-) False iqck
unassigned_transcript_848 other downstream 88759 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641884.1 other downstream 366262 12427504 ~ 12565471 (-) False cep112
unassigned_transcript_847 other downstream 1444808 11486854 ~ 11486925 (-) True trnaq-cug_14
TU208722 other downstream 1706187 11203450 ~ 11225546 (-) True G154033
TU208632 other downstream 1794251 11110968 ~ 11137482 (-) False tnrc6c1
XR_005641885.1 other upstream 17858 12956522 ~ 12972810 (-) False iqck
TU209391 other upstream 34668 12973332 ~ 12979685 (-) False sun1
XR_005641817.1 other upstream 396785 13335449 ~ 13421951 (-) False prkar1b
TU209766 other upstream 1112074 14050738 ~ 14057312 (-) False med9
XR_005641939.1 other upstream 1596307 14534971 ~ 14543992 (-) False LOC120574989

Expression Profile