RNA id: XR_005641917.1



Basic Information


Item Value
RNA id XR_005641917.1
length 523
lncRNA type intronic
GC content 0.44
exon number 4
gene id LOC120574882
representative True

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8063001 ~ 8066280 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCAATTAGTTTTAAGAACTACAATTATTAGACAACTCAACTTAATATTTTTGGAGACTTTACTAAACAACTTAAAAGAACGAGTAAGTGGGTAGGACGTGACGTCATTTCCTAACGGTTCTGGCTCAGAGAGCCGACACCAGGGATGTGGCATGGCGGGCTCAGCTACTCCACGGTCTTACTGGACTCCACCGACAATACCTCAAatggaaaacagcagaaaaagaaaatatgagAGAAACTGGAGCGACAGGAAGgcgtgtgtgagaaagaggggAGGACACCAGCGAAGGACAGCAGGCCATATTTGAACTTAGGTCACAGCGTAAAGGACTGAGCCTCACAGGACACGATCCACTAGCTATCGAGGCTCCCTAGCTTTTATTCCTCTTTAAGgtcaacGCAGAGTTTCAACAAATCACCACCATAAATCTTGAGGCAAAATTCATGTCAATTTTGGACCTTCATTCCCCTAAACTCCTTTCCAGAGAGAAACATCGTGCAGAAATGAATATTTCCTACAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU207007 lncRNA downstream 437923 7570643 ~ 7625078 (-) False grin2aa
TU207003 lncRNA downstream 438007 7569718 ~ 7624994 (-) False grin2aa
TU206913 lncRNA downstream 584387 7478319 ~ 7478614 (-) True G152756
TU206905 lncRNA downstream 693148 7367794 ~ 7369853 (-) True G152748
TU206894 lncRNA downstream 706163 7330810 ~ 7356838 (-) True G152738
TU207058 lncRNA upstream 21646 8087926 ~ 8092269 (-) False G152863
TU207059 lncRNA upstream 21646 8087926 ~ 8092269 (-) False G152863
TU207063 lncRNA upstream 21646 8087926 ~ 8092269 (-) False G152863
TU207064 lncRNA upstream 21646 8087926 ~ 8092269 (-) True G152863
TU207139 lncRNA upstream 225620 8291900 ~ 8292215 (-) True G152924
XM_039824319.1 mRNA downstream 98605 7933459 ~ 7964396 (-) True epn2
XM_039824323.1 mRNA downstream 98606 7933459 ~ 7964395 (-) False epn2
XM_039824322.1 mRNA downstream 98606 7933459 ~ 7964395 (-) False epn2
XM_039824321.1 mRNA downstream 101368 7933459 ~ 7961633 (-) False epn2
XM_039824320.1 mRNA downstream 110677 7933459 ~ 7952324 (-) False epn2
XM_039825380.1 mRNA upstream 7225 8073505 ~ 8085943 (-) False LOC120574884
XM_039825382.1 mRNA upstream 7225 8073505 ~ 8085943 (-) False LOC120574884
XM_039825379.1 mRNA upstream 7225 8073505 ~ 8085943 (-) False LOC120574884
XM_039825381.1 mRNA upstream 7225 8073505 ~ 8085943 (-) False LOC120574884
XM_039825378.1 mRNA upstream 7225 8073505 ~ 8085943 (-) True LOC120574884
TU206683 other downstream 1342358 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 1834887 6182408 ~ 6228114 (-) True G152441
TU206279 other downstream 2449333 5574680 ~ 5613668 (-) False atp5mf
XR_005641918.1 other upstream 15858 8082138 ~ 8100398 (-) False LOC120574885
TU207167 other upstream 374899 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 665117 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 746062 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 787480 8853760 ~ 8856957 (-) True tufm

Expression Profile