RNA id: unassigned_transcript_744


Basic Information

Item Value
RNA id unassigned_transcript_744
length 521
RNA type V_gene_segment
GC content 0.45
exon number 2
gene id LOC120574657
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9239409 ~ 9240018 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTTCACTCTGCAGATATAATAACACTGAACAAACTCTTCTATTGACTCCAGTTAGACCAACATTGATGCTTCATATGTTTGATTTTATGCAAACTCAGTGACCTTCCTTGTTTCTCAGCtataaaaacatcacatcagGCTGTCAGTGGAGTTCACAGCACGTCAGTTTCAACATAAACCATGTTCTCtggagctctgctgctgctgttggcagCTGGATgtgtgaagtgtgaacagttgacccagccagcctctgtgactgtgcagccaggtcaacgtctgaccatcacctgtcaggtctcttattctctcagcagctactacacagcttggatcagacagcctgcagggaaaggactggagtggattggAATGAAACATACTGGAGCTTCACACTACAAAGGTtcactgaagaacaagttcagtatcGACTTATAGACTTCCAGCAAGACAGTGACTCTAAATGGACAGAATGTGCAGCCTGAAGACactgctgtgtattactgtgccagagaggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207900 lncRNA downstream 15089 9217069 ~ 9224320 (-) False LOC120574662
TU207902 lncRNA downstream 19506 9219599 ~ 9219903 (-) True G153462
TU207886 lncRNA downstream 35403 9187250 ~ 9204006 (-) False LOC120574599
TU207892 lncRNA downstream 35550 9196758 ~ 9203859 (-) True G153455
TU207884 lncRNA downstream 45234 9187250 ~ 9194175 (-) False LOC120574599
TU207935 lncRNA upstream 6337 9246355 ~ 9337866 (-) False LOC120574352
TU207951 lncRNA upstream 8379 9248397 ~ 9303347 (-) True G153508
TU207940 lncRNA upstream 9811 9249829 ~ 9273114 (-) False LOC120574652
TU207952 lncRNA upstream 18192 9258210 ~ 9265367 (-) True G153509
TU207938 lncRNA upstream 48285 9288303 ~ 9715061 (-) True G153498
XM_039825003.1 mRNA downstream 191286 9043413 ~ 9048123 (-) True cabp5b
XM_039825617.1 mRNA downstream 202581 9020086 ~ 9036828 (-) False sez6l2
XM_039825615.1 mRNA downstream 202824 9020086 ~ 9036585 (-) True sez6l2
XM_039825761.1 mRNA downstream 220669 9011223 ~ 9018740 (-) True kctd13
XM_039825590.1 mRNA downstream 228478 9003265 ~ 9010931 (-) True hirip3
XM_039824654.1 mRNA upstream 103683 9343701 ~ 9345172 (-) True LOC120574364
XM_039824655.1 mRNA upstream 151547 9391565 ~ 9406804 (-) True LOC120574368
XM_039825001.1 mRNA upstream 457625 9697643 ~ 9739305 (-) True LOC120574579
XM_039824129.1 mRNA upstream 821268 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 821268 10061286 ~ 10149481 (-) False cacna1aa
unassigned_transcript_743 other downstream 11694 9227266 ~ 9227715 (-) True LOC120574350
unassigned_transcript_742 other downstream 14954 9224025 ~ 9224455 (-) True LOC120574662
unassigned_transcript_741 other downstream 17331 9221580 ~ 9222078 (-) True LOC120574641
TU207903 other downstream 18319 9220617 ~ 9221090 (-) False LOC120574348
unassigned_transcript_740 other downstream 18337 9220541 ~ 9221072 (-) True LOC120574348
unassigned_transcript_745 other upstream 812 9240830 ~ 9241342 (-) True LOC120574593
unassigned_transcript_746 other upstream 3130 9243148 ~ 9243779 (-) True LOC120574351
unassigned_transcript_747 other upstream 4424 9244442 ~ 9246696 (-) True LOC120574352
unassigned_transcript_748 other upstream 9821 9249839 ~ 9250269 (-) True LOC120574652
unassigned_transcript_749 other upstream 12216 9252234 ~ 9252773 (-) True LOC120574355

Expression Profile