RNA id: unassigned_transcript_759


Basic Information

Item Value
RNA id unassigned_transcript_759
length 453
RNA type V_gene_segment
GC content 0.48
exon number 3
gene id LOC120574365
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9348069 ~ 9349773 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTGCAGCCTGAAGACactgctgtgtattactgtgccagAGAGCGACAGTGTGAACAGTATTGATCTCATCCGGACAGACTCAATGGTTGTGCAGCCTGGACAGTCTCTGACCATCAGCTGTCAGGTCTCTGGAGTTTGGAGTGAGATCAAACTGGACCAGTCTCCCTCTGAGGTGAAAAGACCTGGAGAGACAGTGAAGATGTCATGTATCATATCTGGTTATAGCATGACAAGCAAGAATATTCACTGGATACGACAGAGACCAGGAGAAGCTCTGGAGTGGATAGCGTGGATGAACACAGGTTCAAACTCTGCTATCTATGGCAGCTCCTTTCAAAGCCGTTTCATCATGACTGAAGATGTTCCCAGCAGCACTCAGTACCTCGAGGTCCAGagcctgacagcagcagattctgctgtttacttCTGTGCTTTCGAAGAGACACAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207935 lncRNA downstream 10203 9246355 ~ 9337866 (-) False LOC120574352
TU207951 lncRNA downstream 44722 9248397 ~ 9303347 (-) True G153508
TU207940 lncRNA downstream 74955 9249829 ~ 9273114 (-) False LOC120574652
TU207952 lncRNA downstream 82702 9258210 ~ 9265367 (-) True G153509
TU207900 lncRNA downstream 123749 9217069 ~ 9224320 (-) False LOC120574662
TU207976 lncRNA upstream 9755 9359528 ~ 9359850 (-) True G153527
TU207998 lncRNA upstream 192345 9542118 ~ 9548305 (-) True G153539
TU207921 lncRNA upstream 253084 9602857 ~ 9603106 (-) True G153481
TU208072 lncRNA upstream 402486 9752259 ~ 9798267 (-) True G153588
TU208076 lncRNA upstream 429516 9779289 ~ 9782563 (-) True G153591
XM_039824654.1 mRNA downstream 2897 9343701 ~ 9345172 (-) True LOC120574364
XM_039825003.1 mRNA downstream 299946 9043413 ~ 9048123 (-) True cabp5b
XM_039825617.1 mRNA downstream 311241 9020086 ~ 9036828 (-) False sez6l2
XM_039825615.1 mRNA downstream 311484 9020086 ~ 9036585 (-) True sez6l2
XM_039825761.1 mRNA downstream 329329 9011223 ~ 9018740 (-) True kctd13
XM_039824655.1 mRNA upstream 41792 9391565 ~ 9406804 (-) True LOC120574368
XM_039825001.1 mRNA upstream 347870 9697643 ~ 9739305 (-) True LOC120574579
XM_039824129.1 mRNA upstream 711513 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 711513 10061286 ~ 10149481 (-) False cacna1aa
XM_039824122.1 mRNA upstream 711513 10061286 ~ 10149481 (-) False cacna1aa
TU207965 other downstream 2854 9344716 ~ 9345215 (-) False LOC120574364
unassigned_transcript_758 other downstream 6723 9340910 ~ 9341346 (-) True LOC120574640
unassigned_transcript_757 other downstream 8348 9339271 ~ 9339721 (-) True LOC120574363
unassigned_transcript_756 other downstream 11716 9326463 ~ 9336353 (-) True LOC120574362
TU207918 other downstream 14325 9333180 ~ 9333744 (-) True G153478
unassigned_transcript_760 other upstream 18884 9368657 ~ 9369149 (-) True LOC120574646
unassigned_transcript_761 other upstream 26660 9376433 ~ 9377037 (-) True LOC120574366
unassigned_transcript_762 other upstream 37554 9387327 ~ 9389005 (-) True LOC120574367
TU207939 other upstream 45651 9395424 ~ 9395927 (-) True G153499
unassigned_transcript_763 other upstream 58081 9407854 ~ 9408482 (-) True LOC120574369