RNA id: unassigned_transcript_774



Basic Information


Item Value
RNA id unassigned_transcript_774
length 495
RNA type V_gene_segment
GC content 0.44
exon number 2
gene id LOC120574379
representative True

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9464600 ~ 9465189 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GATACATTTCTGAAACACTCAGATCAGAAAGCACTGAACTACAGTGTTTCTCACAGAATGGAAAATACCGTTATCTGGAGTTTATTATTTGTAGTTACTATTCATGGAGTTTGGAGTGAGATCAAACTGGACCAGTCTCCCTCTGAGGTGAAAAGACCTGGAGAGACAGTGAAGATGTCATGTATCATATCTGGTTATAGCATGACAAGCTACTATATTCACTGGATCCGACAGAGACCAGGAGAAGCTCTGGAGTGGATTGGGAGGATGAATGCAGGTTCAAACTCTGCTATCTATGGCAGCTCCTTTCAAAACCGTTTCATCATGACTGAAGATGTTCCCAGCAGCACTCAGTACCTCGAGGTCCAGagcctgacagcagcagattctgctgtttacttCTGTGCTCGAGAAGACATAGTGACTGAAGACAGTGGAGCAGCTGCACAAAAACCTCCACAGACAACAAACAGCAATGTGATCTTAAGCATCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU207976 lncRNA downstream 104750 9359528 ~ 9359850 (-) True G153527
TU207935 lncRNA downstream 126734 9246355 ~ 9337866 (-) False LOC120574352
TU207951 lncRNA downstream 161253 9248397 ~ 9303347 (-) True G153508
TU207940 lncRNA downstream 191486 9249829 ~ 9273114 (-) False LOC120574652
TU207952 lncRNA downstream 199233 9258210 ~ 9265367 (-) True G153509
TU207998 lncRNA upstream 76929 9542118 ~ 9548305 (-) True G153539
TU207921 lncRNA upstream 137668 9602857 ~ 9603106 (-) True G153481
TU208072 lncRNA upstream 287070 9752259 ~ 9798267 (-) True G153588
TU208076 lncRNA upstream 314100 9779289 ~ 9782563 (-) True G153591
TU208095 lncRNA upstream 328903 9794092 ~ 9842982 (-) True G153597
XM_039824655.1 mRNA downstream 57796 9391565 ~ 9406804 (-) True LOC120574368
XM_039824654.1 mRNA downstream 119428 9343701 ~ 9345172 (-) True LOC120574364
XM_039825003.1 mRNA downstream 416477 9043413 ~ 9048123 (-) True cabp5b
XM_039825617.1 mRNA downstream 427772 9020086 ~ 9036828 (-) False sez6l2
XM_039825001.1 mRNA upstream 232454 9697643 ~ 9739305 (-) True LOC120574579
XM_039824129.1 mRNA upstream 596097 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 596097 10061286 ~ 10149481 (-) False cacna1aa
XM_039824122.1 mRNA upstream 596097 10061286 ~ 10149481 (-) False cacna1aa
XM_039824120.1 mRNA upstream 596097 10061286 ~ 10149481 (-) False cacna1aa
unassigned_transcript_773 other downstream 559 9463591 ~ 9464041 (-) False LOC120574378
unassigned_transcript_772 other downstream 7130 9456966 ~ 9457470 (-) True LOC120574645
unassigned_transcript_771 other downstream 8938 9446905 ~ 9455662 (-) False LOC120574377
TU207917 other downstream 17228 9446883 ~ 9447372 (-) True LOC120574377
unassigned_transcript_770 other downstream 20876 9443243 ~ 9443724 (-) True LOC120574376
unassigned_transcript_775 other upstream 2319 9467508 ~ 9467948 (-) True LOC120574380
unassigned_transcript_776 other upstream 6626 9471815 ~ 9472365 (-) True LOC120574601
unassigned_transcript_777 other upstream 9640 9474829 ~ 9475349 (-) True LOC120574594
unassigned_transcript_778 other upstream 15996 9481185 ~ 9481676 (-) True LOC120574647
unassigned_transcript_779 other upstream 18456 9483645 ~ 9484106 (-) True LOC120574381

Expression Profile