RNA id: unassigned_transcript_785


Basic Information

Item Value
RNA id unassigned_transcript_785
length 398
RNA type V_gene_segment
GC content 0.51
exon number 2
gene id LOC120574600
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9504761 ~ 9505246 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCCTCTGCAGGTGCAGACTGAGTCAAGTTCCCACCATGACAGTTGTACAGAGTGTCCTCCTCTTGGCTCTCATTTCAGCTGCTCAGGGCCAGTCCCTCACCTTCTCAGAACCAGTGGTGAGCAGAGCTGGACAACCAGTCACTCTGTCCTGTAAGGTGAATGGACTGTCTCTAGCCTGGCTGCACTGGATTCGTCAGAAACCAGGGAAAGGACTGGAATGGATCGGACGCATCGATAGCAGAACTGGCACAATATTTGCCCAAAGTGTCCGAGACCGAGACCAGTTTTCCATCACCAAAGACACTTCCCAAAATCGTGTGCACTTAGAGGTTAAGAGTCTGAAACAAGAAGACTCTGCAGTTTATTATTGTGCACGAGAGCCACAGTGACACACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207893 lncRNA downstream 3294 9199658 ~ 9501467 (-) True G153456
TU207976 lncRNA downstream 144911 9359528 ~ 9359850 (-) True G153527
TU207935 lncRNA downstream 166895 9246355 ~ 9337866 (-) False LOC120574352
TU207951 lncRNA downstream 201414 9248397 ~ 9303347 (-) True G153508
TU207940 lncRNA downstream 231647 9249829 ~ 9273114 (-) False LOC120574652
TU207998 lncRNA upstream 36872 9542118 ~ 9548305 (-) True G153539
TU207921 lncRNA upstream 97611 9602857 ~ 9603106 (-) True G153481
TU208072 lncRNA upstream 247013 9752259 ~ 9798267 (-) True G153588
TU208076 lncRNA upstream 274043 9779289 ~ 9782563 (-) True G153591
TU208095 lncRNA upstream 288846 9794092 ~ 9842982 (-) True G153597
XM_039824655.1 mRNA downstream 97957 9391565 ~ 9406804 (-) True LOC120574368
XM_039824654.1 mRNA downstream 159589 9343701 ~ 9345172 (-) True LOC120574364
XM_039825003.1 mRNA downstream 456638 9043413 ~ 9048123 (-) True cabp5b
XM_039825617.1 mRNA downstream 467933 9020086 ~ 9036828 (-) False sez6l2
XM_039825001.1 mRNA upstream 192397 9697643 ~ 9739305 (-) True LOC120574579
XM_039824129.1 mRNA upstream 556040 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 556040 10061286 ~ 10149481 (-) False cacna1aa
XM_039824122.1 mRNA upstream 556040 10061286 ~ 10149481 (-) False cacna1aa
XM_039824120.1 mRNA upstream 556040 10061286 ~ 10149481 (-) False cacna1aa
TU208012 other downstream 852 9498948 ~ 9503909 (-) True LOC120574383
unassigned_transcript_784 other downstream 5374 9498941 ~ 9499387 (-) False LOC120574383
unassigned_transcript_783 other downstream 8443 9495883 ~ 9496318 (-) True LOC120574650
TU207979 other downstream 9696 9491709 ~ 9495065 (-) True LOC120574603
unassigned_transcript_782 other downstream 12544 9491667 ~ 9492217 (-) False LOC120574603
unassigned_transcript_786 other upstream 23739 9528985 ~ 9529472 (-) True LOC120574586
unassigned_transcript_787 other upstream 26637 9531883 ~ 9532384 (-) True LOC120574624
TU208024 other upstream 26647 9531893 ~ 9532376 (-) False LOC120574624
TU207942 other upstream 28307 9533553 ~ 9552295 (-) True G153502
unassigned_transcript_788 other upstream 29393 9534639 ~ 9535182 (-) True LOC120574384

Expression Profile