RNA id: unassigned_transcript_788


Basic Information

Item Value
RNA id unassigned_transcript_788
length 453
RNA type V_gene_segment
GC content 0.46
exon number 2
gene id LOC120574384
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9534639 ~ 9535182 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGATTTCATGGAGTTTGTTCTTTATAGTTACTTTTCATGGAGTTTGGAGTGAGATTAATCTGGACCAGTCTCCCTCTGAGGTGAAAAGACCTGGAGAGACAGTGAAGATGTCATGTATCATATCTGGCTTTGACATGACAGACTACTATATTCACTGGATACGACAGAGACCAGGAGAAGCTCTGGAGTGGATTGGGAGGATGAATGCAGGCTCAAACTCTGCTAGCTATGGCAGCTCCTTTCAAAGCCGTTTCATCATGACTGAAGATGTTCCCAGCAGCACTCAGTACCTCGAGGTCCAGagcctgacagcagcagattctgctgtttacttCTGTGCTCGAGAAGACACAGTGACTGAAGACAGTGGAGCAGCTGCACAAAAACCTCCACAGACAACTAAGAGCAATTTGATCTTAATGACATCTGAGTCCCCCCACCTCCCTTTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207893 lncRNA downstream 33172 9199658 ~ 9501467 (-) True G153456
TU207976 lncRNA downstream 174789 9359528 ~ 9359850 (-) True G153527
TU207935 lncRNA downstream 196773 9246355 ~ 9337866 (-) False LOC120574352
TU207951 lncRNA downstream 231292 9248397 ~ 9303347 (-) True G153508
TU207940 lncRNA downstream 261525 9249829 ~ 9273114 (-) False LOC120574652
TU207998 lncRNA upstream 6936 9542118 ~ 9548305 (-) True G153539
TU207921 lncRNA upstream 67675 9602857 ~ 9603106 (-) True G153481
TU208072 lncRNA upstream 217077 9752259 ~ 9798267 (-) True G153588
TU208076 lncRNA upstream 244107 9779289 ~ 9782563 (-) True G153591
TU208095 lncRNA upstream 258910 9794092 ~ 9842982 (-) True G153597
XM_039824655.1 mRNA downstream 127835 9391565 ~ 9406804 (-) True LOC120574368
XM_039824654.1 mRNA downstream 189467 9343701 ~ 9345172 (-) True LOC120574364
XM_039825003.1 mRNA downstream 486516 9043413 ~ 9048123 (-) True cabp5b
XM_039825617.1 mRNA downstream 497811 9020086 ~ 9036828 (-) False sez6l2
XM_039825001.1 mRNA upstream 162461 9697643 ~ 9739305 (-) True LOC120574579
XM_039824129.1 mRNA upstream 526104 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 526104 10061286 ~ 10149481 (-) False cacna1aa
XM_039824122.1 mRNA upstream 526104 10061286 ~ 10149481 (-) False cacna1aa
XM_039824120.1 mRNA upstream 526104 10061286 ~ 10149481 (-) False cacna1aa
unassigned_transcript_787 other downstream 2255 9531883 ~ 9532384 (-) True LOC120574624
TU208024 other downstream 2263 9531893 ~ 9532376 (-) False LOC120574624
unassigned_transcript_786 other downstream 5167 9528985 ~ 9529472 (-) True LOC120574586
unassigned_transcript_785 other downstream 29393 9504761 ~ 9505246 (-) True LOC120574600
TU208012 other downstream 30730 9498948 ~ 9503909 (-) True LOC120574383
unassigned_transcript_789 other upstream 4276 9539458 ~ 9539923 (-) True LOC120574630
unassigned_transcript_790 other upstream 6962 9542144 ~ 9542968 (-) True LOC120574626
TU207931 other upstream 8633 9543815 ~ 9580982 (-) True G153491
unassigned_transcript_791 other upstream 12863 9548045 ~ 9548469 (-) True LOC120574656
unassigned_transcript_792 other upstream 30270 9565452 ~ 9574901 (-) True LOC120574585

Expression Profile