RNA id: unassigned_transcript_854



Basic Information


Item Value
RNA id unassigned_transcript_854
length 72
RNA type tRNA
GC content 0.65
exon number 1
gene id trnae-cuc_25
representative True

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15564133 ~ 15564204 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCTCACCGccgcggcccgggttcgattcccggtCAGGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU210400 lncRNA downstream 9247 15554043 ~ 15554886 (-) True G155242
TU210389 lncRNA downstream 20116 15541557 ~ 15544017 (-) True G155234
TU210385 lncRNA downstream 36528 15526949 ~ 15527605 (-) True G155232
TU210269 lncRNA downstream 159564 15368229 ~ 15404569 (-) True G155151
TU210240 lncRNA downstream 250541 15312080 ~ 15313592 (-) True G155126
TU210482 lncRNA upstream 118165 15682369 ~ 15691652 (-) True G155295
TU210486 lncRNA upstream 130569 15694773 ~ 15695558 (-) True G155298
TU210500 lncRNA upstream 164729 15728933 ~ 15774308 (-) True G155307
XR_005641874.1 lncRNA upstream 258787 15822991 ~ 15825654 (-) True LOC120574547
TU210521 lncRNA upstream 259689 15823893 ~ 15825649 (-) False LOC120574547
XM_039825157.1 mRNA downstream 5396 15557080 ~ 15558737 (-) False zgc:103625
XM_039825156.1 mRNA downstream 5465 15557080 ~ 15558668 (-) True zgc:103625
XM_039826254.1 mRNA downstream 29607 15530445 ~ 15534526 (-) True rsad1
XM_039826253.1 mRNA downstream 29856 15530445 ~ 15534277 (-) False rsad1
XM_039823877.1 mRNA downstream 41624 15512352 ~ 15522509 (-) False epn3a
XM_039825320.1 mRNA upstream 41299 15605503 ~ 15645622 (-) False gcgra
XM_039825322.1 mRNA upstream 41299 15605503 ~ 15645622 (-) False gcgra
XM_039825321.1 mRNA upstream 41299 15605503 ~ 15619968 (-) True gcgra
XM_039824836.1 mRNA upstream 98070 15662274 ~ 15664597 (-) True LOC120574497
XM_039824926.1 mRNA upstream 105961 15670165 ~ 15673455 (-) False crb3a
TU210305 other downstream 114630 15443164 ~ 15449503 (-) False metrnla
unassigned_transcript_853 other downstream 553793 15009798 ~ 15010340 (-) True LOC120573850
unassigned_transcript_852 other downstream 563989 14998773 ~ 15000144 (-) True LOC120574429
TU210040 other downstream 706576 14851939 ~ 14857557 (-) False LOC120575102
TU210041 other downstream 706576 14851939 ~ 14857557 (-) True LOC120575102
XR_005641871.1 other upstream 153643 15717847 ~ 15724422 (-) False tecra
TU210508 other upstream 179471 15743675 ~ 15744117 (-) False LOC120574537
TU210507 other upstream 183113 15747317 ~ 15749430 (-) False LOC120574502
TU210517 other upstream 248854 15813058 ~ 15815369 (-) True G155323
XR_005641873.1 other upstream 589583 16153787 ~ 16156067 (-) False LOC120574545