RNA id: XM_039777828.1


Basic Information

Item Value
RNA id XM_039777828.1
length 4577
RNA type mRNA
GC content 0.59
exon number 26
gene id LOC120544212
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 101803 ~ 156815 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcagtctgtctctcagtctgtccctcagtctgtctctccgtctgtctctccgtctctgtctgtctctctcagaaTGGACCAGGTTCATTATGGATTATTGATTCTTGTGTTTCTGCTGCAGATGGACTGTTTACCCTCCGTTTACATCACTGACAACTCAGATTCTCTCCATCAGGTTCTGTCAGAGTTCGCTGTCGTTCGTCCAATCAGACCCCCCCCACCGGGGGCGGCGTTCCCGCCCTTCCCGCCcgcgagaaaaaaaaagccccccccccccccggcgcCCCCGGAGGGCCCCCCCCCGGAGGCCCCGCCACTGTCGGtcctccctccttttttttgAGTGGGGGCCTGCGTGTTCTACAATCGACGGTGCTTACGGCGGCTGCAGCTGATTCTGCGTCCCAACGCGCGCCTCGTGGCCCCCGCTGCCTCCGTGGAGTGGTGGGAGGAGTCAGGGCGCAAACGCtcgcagccaatcacagacaccGGCTGCTTCTACAGCGGAGAGGTGGCCGACATGGAGGACACGGCTGTCGCCGTTAGCAACTGTGATGGGCTGGCCGGGATGATCCGGACGGGTCAGGAGGAGTTCTTCATCGAGCCGTTGGATCGCCGGAGGacaggaagagaagaagaagaggaagaagaggaagaagaagaagaaggaggaagaCAGCACATCGTTTATCGCTCCTCAGCCATCATTAACAAACACTCGGCCAATCAAACAGCAGCTGACTTCCTGCTAGGTCCTCTGTTAGGGTCTCTGAACTTGACCCAGAAGGTGTCGGGGTCCAGATCCAGACCAGCTCGGCGCCGGCGCTATGCTGAAGAGGCTGAACTGTTAAACATCGAGGTCCTGTTAGCCGTGGACTACTCTGTTCTTCTCTTCCACGGACGAGACCACATTCAGAAATACCTTCTGACATTCATGAACATAGTTAACGAGATCTATCAGCATCATTCTCTGGGAGCCAACATCAACGTTGTTCTCGTCAAAATCATCATGTTGTCTCCATCCAAGTCCCAGGAGCTGATCTCTGTGGGGAACGCCCAGAAGAGTTTGGAGAACGTCTGTGGATGGTCGTACCTGCAGCAGAGAGACCAGAGCCACGCCCAGCAGCACGACCACGCCATCTACCTCACCAGGCAGGAGTTCGGGCCCTCGGGCATGCAGGgttaTGCTCCAGTTACAGGAATGTGTCACTTGCATCGGAGCTGCGTCCTGGTCTTTGAAGACGGGTTTTCCTCGGCCTTCGTAGCGGCTCATGAAACAGGACACGtCTGGACCGAGCTGCACAAGTACCTGCATAAATACGACTGTCTCCGTGACGACCCGTTCCAACACGATTGGCCGGCTCAGCCTCCGTTGCCGGGGTTTCACTACTCCATGGACCAACAGTGTCGCTTCGACTTCGGACCAGGATACAGCCTCTGTACTGCaTACGCGAGCATCGAGCCCTGCAGGCAGCTGTGGTGCAGCGAGTACAGCAACCCGTTCTACTGTAAGACCAAGAAAGGCCCGCCGCTGGACGGGACCAAGTGTGGACCGGGGAAGCACTGCTTTAAAGGTCTCTGCATGAAGCTGACCCCCAACCTGCTGAGACAGGACGGCGGCTGGGGGGCGTGGAGCGCGTGGGGCGCCTGCTCCCGGACCTGCGGGGGCGGAGTCCAGTTCCGGTCCCGGCGCTGCGACAGCCCAGCTCCAGCCAACGGGGGGCGCACCTGCTTCGGAAACAGCTACGAGTTCACGCTGTGCAGCCGGGACGAGTGTCCCCCGCTCACTGACTTCAGAGAGGATCAGTGTAAAGTCTGGAATCCATTTTTCGAACATGAAGGAAAAAAACATCACTGGCTGCCGTACCAACACCCTGACCTCTCCCCCCAGTCCAAGGAGACAGGCGCCGTGGTGTCCATGGACAGAATGGTGCATGATGGGACACCGTGTTCCTACGGAGACGCCCACAGCGTCTGTGTGCGGGGAGACTGTGAGCATGTAGGCTGTGACGGCCAGATAGCGTCCGACCAGCAGGAGGACAGATGTGGAGTGTGTGGAGGAGATAACTCCAACTGTAAGATCGTTAAAGGAAACTTCACCCGCAGCACCAAGAAACAAGGTTACCTAAAGATCCTGGAGATCCCCAAAGGAGCGCGACACCTTCTGGTCCAGGAGTTCAGAGAGACACCTCACATCCTGGCGATGACCAACCTGGAGACGGGTCACGTCTTCCTCAACGATGAACACGAGCTCCCAGAATCCCGTGTGGTGATCGAGAAAGGCGTGGCGTGGGAGTACAGCAACAGCGAGGAGGCGGAGTCTATCCAGACCACCGGGCCGCTGCAGTACGGAGTCCTGCTCATGGTCCGTTCCCATGGCGACTCCAAGGTGACGGTGTCCTATAAGTACGTGATCCAGGACGGTCTGCGGTCGTCACTGGAGTCCAACCTGCTGCAGGAGGACGCCGTCTTCTACGAGTGGGCGCTAAAGAAGTGGTCGGTCTGCTCCAAGCCCTGCGGAGGAGGGAAACAGTACACGAGGTTCGGCTGCAGGAGGAAGGCCGACGGGAAGATGGTCCCGAGGACGTTCTGCTCCAACATCAACAAGCCCAGAGCCATCAGCCGCAGCTGCAACACGGACGCCTGCAGCTCACCACGCTGGGTGAGCGGGCCGTGGGAGGACTGCAGCGCCTCCTGTGGTCAGACGGGGTGGCAGCGCCGCTGGGTCAGCTGCCAGCAGGCGTCTGCCGACGGACAGTCCAGCACGGGACAGTCCAGCACGGGACAGTCCAGCACGGACCAGCAGGCATCCAGCGCGGACCAGCAGGCTTCCAGCGCGGGACAGGGACAGCAGGCATCCGGCGCGGGACAGCAGACACGCTCAGTGAACAGcaaactgtgtggaggagagcGACCGGAAGGGAAACGAACCTGCAACCGTTTCCTCTGCCCCGCTGCCTGGCGGGCCGGACCCTGGACACCGTGTTCGGTGTCCTGTGGGAACGGGACCCAGGAGCGCCAGGTTGCGTGTTTGAGTCCCGACGGTTCAGCACGAAACTGCAGCGACCCTCGACCAATCACAACCCGCGCCTGCCAGCCCCCTCCCTGCAGCGgtgaCCAGAGGAACTCCATCATCCAGTGGTTGTCTCGTTCTAACTCTGACTTCACTCCCAACATCTCCTCCAGGCAGCGTTGCCGCGGTGACCGCTCTGTGTTTTGCCGGATGGAGGTGTTGACTCGGTACTGCTCCATCGCCGGATACCGTCAGATGTGCTGCAAGTCCTGCAGCCATGGCAACTTCAGCAGCAGCATCCCGCCCAGCGCCAACAGCAGTTCCTGGAGTGTAACCATGGAGACGATGACTTCAGCATCCGCCATCATCGTCAGCACCCCACCCCCCAGCGTCACCATGACTCCGCCCCCCAGCATCACTGTAGCTCCGCCTCCCAGCGTCACCATGACTCCGCCCCCCAGCGTCACCGTGACTCCGCCCCCCAGTGTCACCGTGACTCCGCCCCCAACCAGCCAGAGCAGCACCGACTTTGTGTACGTGGAGTACGAGGATTATGGCGACATTTCATCCTACAAGGATCCTTCTGTCCCCTCTGACACTCCTCATATTGGCACTACTAGTACTACAAGTCATCTGAGAGAAACTGCTTCGAAAACTCCCCTTCCCACAATGCATCCTGCTACAGTTCCCGTGGTAACTGCTGAGGATCAGAGTCCCTGGACGTCTGCCGTCCCAGAGTTCCCCACAACGACCACTTCTACAACTACAAGACGTACAAGAAAAACTGCTCCGCCACATTTATTCAAGAAGAAAACTCCCACAATGCCGCGTGGGAAAACTACCGATCCCACAATGCATCCTGCTACAGTTCCCGTAGTAACCGCTGTAACATCTGCCATCCGAGAGTTCCCCACGACGACCGCTTCCACAACTACAAAACGTACGAGAAAAACTGCTCCGCCACATTTATTCAAGAGGAAAACTACAGCTCCCACAATGCACCCTGCTACAGTTCCAGTGGTAACTGCTGTGGCAGCAATCTTTAACGCCACTTCTTCCCCGAACACGCCACTAGAGGGGCGGGGCCTGTCAGGGGGGCGGAGCCTGGAGCCGGCGCTGTCTAAGCGGGAGAACAACTCCGTTGACGAGGTCCCGTATCGGATCGTGGGATTGGACGGCGGCGACGGGCGGGGACAGCAGAACTACTTTGTGCCGCGGCGCACCCCTCCGCTCCGCGAGCGAACGCAAAACAAACGCATCCAGCAGCTTCTGAACGAGAAGCGGCACCGAGAGGGCAGGACGCACGCCGCACGCACATGAACATACACAGGGCGCTCGCTCGTTAGGACGCATGTGCAGCTTGCTCGCTTCCTGCTAACGAGCTCTTAACGAGGAGCAGACTGCCAACGTTAACGAGCTCTTAACGAGGAGCAGACTGCAGAGCCGACAACACAAACCACcccaatagacctttttcacggtagacatgttgacatgtcatagtaggaacagcacaggtgtattaaaccattactgatggctgcattccacttaggagaggcc

Function

GO:

id name namespace
GO:0031012 extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219522 lncRNA downstream 18974 81511 ~ 82829 (-) True G162169
TU219521 lncRNA downstream 64278 36462 ~ 37525 (-) True G162168
TU219585 lncRNA upstream 63492 220136 ~ 220441 (-) True G162206
TU219597 lncRNA upstream 92028 248672 ~ 249157 (-) True G162218
TU219601 lncRNA upstream 93568 250212 ~ 252990 (-) True G162221
TU219548 lncRNA upstream 105989 262633 ~ 264470 (-) True G162185
TU219551 lncRNA upstream 163602 320246 ~ 320818 (-) True G162186
XM_039778022.1 mRNA downstream 1096 94635 ~ 100707 (-) True ndufa2
XM_039777741.1 mRNA upstream 28768 185412 ~ 194355 (-) True LOC120544147
XM_039777740.1 mRNA upstream 28768 185412 ~ 194349 (-) False LOC120544147
XM_039777765.1 mRNA upstream 155748 312392 ~ 319615 (-) False LOC120544162
XM_039777762.1 mRNA upstream 155748 312392 ~ 319615 (-) True LOC120544162
XM_039777764.1 mRNA upstream 155748 312392 ~ 319608 (-) False LOC120544162
TU219526 other downstream 1111 94636 ~ 100692 (-) False ndufa2
TU219519 other downstream 78366 21716 ~ 23437 (-) True G162166
TU219661 other upstream 314448 471092 ~ 473969 (-) False pwwp2a
TU219576 other upstream 390975 547619 ~ 558892 (-) False LOC120544218
TU219693 other upstream 413608 570252 ~ 572002 (-) False ttc1
TU219748 other upstream 630127 786771 ~ 794731 (-) True G162311
TU219808 other upstream 960429 1117073 ~ 1118688 (-) True G162352

Expression Profile