RNA id: TU219584


Basic Information

Item Value
RNA id TU219584
length 1580
lncRNA type sense_over
GC content 0.48
exon number 5
gene id LOC120544218
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 543704 ~ 558922 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtctgtgtgtctgtgtgtctgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctctctctctctcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctctctctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctctctctctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtctgtgtgtgtgtgtctctgtgtgtatatctgtgtgtagtCTGGACTTTGAGTACCTGAATGATCTTCCCGTTCTCATTCTGGACGTTGACGACGACTTTAAGAACGATCGCATCAAACAGGAAGCCATCATCGACGAGGTCCGAGACCTACTCTCCACGCTGTAGACCAATCACAGCTCTGCTCGTCCCCACGCTGTAGACCAATCACAGCTCGGCTCGTCTCCACGCTGTAGACCAATCACAGCTCGGTCGTCTCCACGCTGTAGACCAATCACAGCTCGGCTCGTCTCCACGCTGTAGACCAATCACAGCTCGGCTCGTCTGATTGGACGACCCCGTTactttgtaaatgtttttcttgATGAATTTTTGACTGATTTTAATGCAGAACTCCAGTTCTCTCTTcctgtatattttatatttttgtagaTACaaattaaagtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgagtgtgtgttgttgtgtgtgtgtgtgagagaggagtgtgagtgtgtgtgtgagagagagagagagagagagtgtgagtgtgagtgtgagagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagtgtgagtgtgtgtgtgagtgagagagagagtgtgagtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagtgtgagtgtgtgtgtgtgtgtgtgagagagagagagtgtgagtgtgtgtgtgtgtgtacacacttgAATTAGTTTGATATTTATACTTCAGTCTCGTCATCCTCTCAAAGGGAAGAAGAACTGTAATGCTGGTTTATCCTGACTTTGAGGGTGTAAGTGAACACACCACGGTGCTTTCAGGCTTACACAGTTACATTTGTTTTCTCAGCTGGAATAAAGAAACTCAGACTGACTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219681 lncRNA downstream 8223 534193 ~ 535481 (-) False G162269
TU219683 lncRNA downstream 8223 534193 ~ 535481 (-) True G162269
TU219685 lncRNA downstream 8223 534193 ~ 535481 (-) False G162269
TU219672 lncRNA downstream 62937 480473 ~ 480767 (-) True G162265
TU219663 lncRNA downstream 69735 471092 ~ 473969 (-) False pwwp2a
TU219669 lncRNA upstream 37556 591768 ~ 600857 (-) True G162262
TU219721 lncRNA upstream 122453 676665 ~ 683561 (-) True G162293
TU219723 lncRNA upstream 153247 707459 ~ 708067 (-) True G162295
TU219700 lncRNA upstream 201509 755721 ~ 826383 (-) True G162278
TU219736 lncRNA upstream 210551 764763 ~ 765382 (-) True G162306
XM_039777730.1 mRNA downstream 6752 508137 ~ 536952 (-) True oatx
XM_039777723.1 mRNA downstream 41600 473518 ~ 502104 (-) True pwwp2a
XM_039777725.1 mRNA downstream 81658 437951 ~ 462046 (-) False slc23a1
XM_039777779.1 mRNA upstream 6132 560344 ~ 568709 (-) False pfdn1
XM_039777778.1 mRNA upstream 6132 560344 ~ 568709 (-) True pfdn1
XM_039777743.1 mRNA upstream 16023 570235 ~ 578849 (-) False ttc1
XM_039777742.1 mRNA upstream 16023 570235 ~ 578849 (-) True ttc1
XM_039777843.1 mRNA upstream 36822 591034 ~ 632939 (-) True tmprss15
TU219661 other downstream 69735 471092 ~ 473969 (-) False pwwp2a
TU219544 other downstream 406317 124348 ~ 137387 (-) False LOC120544212
TU219526 other downstream 443012 94636 ~ 100692 (-) False ndufa2
TU219519 other downstream 520267 21716 ~ 23437 (-) True G162166
TU219693 other upstream 16040 570252 ~ 572002 (-) False ttc1
TU219748 other upstream 232559 786771 ~ 794731 (-) True G162311
TU219808 other upstream 562861 1117073 ~ 1118688 (-) True G162352
TU219825 other upstream 638590 1192802 ~ 1310616 (-) True G162358
TU219834 other upstream 641901 1196113 ~ 1201434 (-) True G162359

Expression Profile