RNA id: TU219663


Basic Information

Item Value
RNA id TU219663
length 2001
lncRNA type sense_over
GC content 0.52
exon number 3
gene id pwwp2a
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 471092 ~ 502104 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGGAGAAGCGTCGCCGTaagtcctcctcctcttcttcttcttcctcttcctcgtccTCGCGGCCCGCCACGTTCTCCAAGTCCGTGTCCAAGGCGGCGCTGCCGGACGGCCGCACCGTGTGCGCCGGAGACATCGTGTGGGCCAAGATCTACGGCTTCCCGTGGTGGCCTGCGCGCGTGCTGGGCATCACCGTGGCGCGCCGCGGCGACACGGGGCTGGCGGTGACGCAGCAGGCGCGCGTGTCGTGGTTTGGCTCGCCGACCACGTCCTTCCTGCCGCTCGGCCAGCTGGCGCCGTTCCTCGAGAGCTTCCAGTCGCGCTTCgacaggaagaggaagggcCCGTACCGCCGCGCCATCGCCGAGGCCGCCAGCGCCGCCAAGCAGCTCACGCCTGAGGTCCGCGCGCTGCTCACACAGTTTGAGACGTAGCatcggcccccccccccccacctcagacaagacacacacacacacacacacacacagatacacaaacacacacacggatacacacacacacacacacacacacacacagatacacacacacacacacacacacacacacagatacacacacacacacacacacatacacacacacacacatatatatacacacagatacacacacacacacacacacatacacacacacacagagatacacacacaaacacacacacacacacacatacacacacacacagagatacacacacacacacacacacacacacacacacataaacagatacacacacacacataaacagatacacacacagatacacagatacacacacacatatacacacacacagatacacgcacactgacacacacacacacacaataggccCCGCCCCTTTAGACTGattcctgtctgtctgagactgatgcagacagacaggcagacagacagacggactcTGTTCATGTTTCTGTTCTTCTTGTTTAGACTGTGGGCGGGGCTTCTCTTTACAGGCTCCTCCCCCTGCCTTCAGAGGCCCCTCCCCCTATCTTCAGAGGCCCCTCCCCCTATCTTCAGAGGCCCCTCCCCTGTCTTCAGAGGCCCCTCCCCCTATTTTCAGAGGCTCCTCCCCCTATCTTCAGAGGCCCCCTCCCCCTGTCTTCAGAGGCTCCTCCCCCTATCTTCAGAGGCCCCTCCCCCTGTCTTCAGAGGCCCCTCCCCCTGCCTTCAGAGGCCAGTGTGATCTCGGATCTCCCGGCCGGAGCTCGGTCTTTTAAGGGGTTAATGATGtcacagtgatgtcatcagactACAGTGTGTTTATCAGGCAGGGAGGCTCTCTCCCAGtgcatcatgggaaatgtaggatccagagATGAGTTTCTAAAGTGAGATTCAGACTAAAGTTTGTTCTGTTTCTTTAAGAGTAAGATTCAGcctgctgattggctgacttAACACATCACGATGATGTCACTCGTTTACGtcaataatgtaaaaataaacactAATTAAGATCCagaagctaagctaaccgttgCCGTAGACGCGGCGCGTGACGCGATAGTTTAGTTAACAGAGTGTTGTCCAAACTGAGGCCGGGGTCTCAAACACGGTCCAGAGCAGAGCCGCAGCGATCCAGAGGGGATCAGCTAATGCATCACGTGTTCTTTGATTGGTCCCCGTAGTTTGGTCCTCAGAGCCAATCAGAATCTGAGAATTTAGAGGGCTGTTTCTTTTATTGAGGTAGAGAATTGTTGACATTCTGAGattaattttaatgtttttaattattgttttgaTGCTCAGAGATGTTTTATTTAGACAGACGTCTCACTCTGTCCGTGTTTGGTCCCCGACCTCGATGacgctgatgatgatgatgatgatgatgatgatgatgaaggtgTTGTAGTTCCAGACTCTTTTTACCGTCTGTTTGCAGATCAGAGATCCTGAACTAAAACCTGTTGGGACAAAATAACGGAAACACACGGACAAAAATCTAAATCTGAGATGCGact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219651 lncRNA downstream 8208 462678 ~ 462884 (-) True G162258
TU219642 lncRNA downstream 72913 397823 ~ 398179 (-) True G162252
XR_005636472.1 lncRNA downstream 92406 371982 ~ 378686 (-) True LOC120544187
TU219628 lncRNA downstream 114566 356211 ~ 356526 (-) True G162242
TU219551 lncRNA downstream 150274 320246 ~ 320818 (-) True G162186
TU219672 lncRNA upstream 6504 480473 ~ 480767 (-) True G162265
TU219681 lncRNA upstream 60224 534193 ~ 535481 (-) False G162269
TU219683 lncRNA upstream 60224 534193 ~ 535481 (-) True G162269
TU219685 lncRNA upstream 60224 534193 ~ 535481 (-) False G162269
TU219579 lncRNA upstream 69735 543704 ~ 546148 (-) False LOC120544218
XM_039777724.1 mRNA downstream 8624 437951 ~ 462468 (-) True slc23a1
XM_039777725.1 mRNA downstream 9046 437951 ~ 462046 (-) False slc23a1
XM_039777727.1 mRNA downstream 9115 437952 ~ 461977 (-) False slc23a1
XM_039777728.1 mRNA downstream 9357 437952 ~ 461735 (-) False slc23a1
XM_039777749.1 mRNA downstream 43326 392067 ~ 427766 (-) True mat2b
XM_039777730.1 mRNA upstream 34168 508137 ~ 536952 (-) True oatx
XM_039777841.1 mRNA upstream 70313 544282 ~ 558922 (-) False LOC120544218
XM_039777779.1 mRNA upstream 86375 560344 ~ 568709 (-) False pfdn1
XM_039777778.1 mRNA upstream 86375 560344 ~ 568709 (-) True pfdn1
XM_039777743.1 mRNA upstream 96266 570235 ~ 578849 (-) False ttc1
TU219544 other downstream 333705 124348 ~ 137387 (-) False LOC120544212
TU219526 other downstream 370400 94636 ~ 100692 (-) False ndufa2
TU219519 other downstream 447655 21716 ~ 23437 (-) True G162166
TU219576 other upstream 73650 547619 ~ 558892 (-) False LOC120544218
TU219693 other upstream 96283 570252 ~ 572002 (-) False ttc1
TU219748 other upstream 312802 786771 ~ 794731 (-) True G162311
TU219808 other upstream 643104 1117073 ~ 1118688 (-) True G162352
TU219825 other upstream 718833 1192802 ~ 1310616 (-) True G162358

Expression Profile