RNA id: TU219668


Basic Information

Item Value
RNA id TU219668
length 213
lncRNA type read_through
GC content 0.49
exon number 2
gene id G162261
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 552398 ~ 592059 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacacacacacacacaaacacacacagacacacacagacacacacagacacacacacacagacacacacacacagacacacacacagagacacacacacacagacacacacagacacacacacacagacacacacacacacacacacacacacacacacacacacacacacacacagacagagacacatacacacacacacacacacac

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219579 lncRNA downstream 6250 543704 ~ 546148 (-) False LOC120544218
TU219582 lncRNA downstream 6250 543704 ~ 546148 (-) False LOC120544218
TU219583 lncRNA downstream 6578 543704 ~ 545820 (-) False LOC120544218
TU219681 lncRNA downstream 16917 534193 ~ 535481 (-) False G162269
TU219683 lncRNA downstream 16917 534193 ~ 535481 (-) True G162269
TU219721 lncRNA upstream 84606 676665 ~ 683561 (-) True G162293
TU219723 lncRNA upstream 115400 707459 ~ 708067 (-) True G162295
TU219700 lncRNA upstream 163662 755721 ~ 826383 (-) True G162278
TU219736 lncRNA upstream 172704 764763 ~ 765382 (-) True G162306
TU219738 lncRNA upstream 179435 771494 ~ 776493 (-) True G162307
XM_039777730.1 mRNA downstream 15446 508137 ~ 536952 (-) True oatx
XM_039777723.1 mRNA downstream 50294 473518 ~ 502104 (-) True pwwp2a
XM_039777725.1 mRNA downstream 90352 437951 ~ 462046 (-) False slc23a1
XM_039777844.1 mRNA upstream 44595 636654 ~ 663746 (-) True LOC120544220
XM_039777722.1 mRNA upstream 102206 694265 ~ 727005 (-) True LOC120544137
XM_039777771.1 mRNA upstream 186509 778568 ~ 783234 (-) True LOC120544167
XM_039777755.1 mRNA upstream 214092 806151 ~ 815589 (-) True LOC120544156
XM_039777845.1 mRNA upstream 237036 829095 ~ 844858 (-) False LOC120544221
TU219661 other downstream 78429 471092 ~ 473969 (-) False pwwp2a
TU219544 other downstream 415011 124348 ~ 137387 (-) False LOC120544212
TU219526 other downstream 451706 94636 ~ 100692 (-) False ndufa2
TU219519 other downstream 528961 21716 ~ 23437 (-) True G162166
TU219748 other upstream 194712 786771 ~ 794731 (-) True G162311
TU219808 other upstream 525014 1117073 ~ 1118688 (-) True G162352
TU219825 other upstream 600743 1192802 ~ 1310616 (-) True G162358
TU219834 other upstream 604054 1196113 ~ 1201434 (-) True G162359
TU219891 other upstream 766127 1358186 ~ 1358523 (-) True G162396

Expression Profile