RNA id: XM_039777742.1


Basic Information

Item Value
RNA id XM_039777742.1
length 1734
RNA type mRNA
GC content 0.55
exon number 8
gene id ttc1
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 570235 ~ 578849 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCATTAAATCAGAAGAAGCGTGTCATCGTCCCGGAAGTGATGTCAGCGTGAATCTTCGACAGGCTAACTAGTGTTAGCAGCTACGAGAATAAATCAGCCgttttttaaggtttttgttATTGTAATCTTACGCAAACCGCCAAACTGATGACATCACACAGGTCTGTGACGTGGCAGATGGGTGACAACATGATTACGACCCGAATTTAGCTGTTAGCTGCAGTTAGCTCCGTCACACTGACGGTCCGTTAAGAAGTCCCATCGGAAATCCGCCAATTTAACAGCTGGAACATTCTGGATCACAGAAGAGCTTCAAAATGAGCAGCCGAGTGGCTGGAAAACCCAGAGAGACGGAgatggagaaggaggagaaaaaggaggaggaggagaaggaggactTTTACGACTGCCAGGAGACTCTGGAGCCTCCAGGCAGACAGGAAGCAGcagtggaggaagaggaggacttTCACATTAAAAccaacagacagactgacagaagagagagagaggagcagggaGGCAGGCTGCAGGAGGAACAGGGAGACAGGCTGCAGGGAGACAGGCTGCAGGAGGAGCATGGAAATAGGCTGCTGGAGGAGCAGGGAGACAGGCTGCAGGAGGAGCAGGGAGACAGGCTGCAGGAGGAGCAGGGAGACAGGCTGCAGGAGGAGCAGGGAGACAGGCTGCAGGGAGACAGGCTGCAGGAGGAGCAGGGAGACAGGCTGCAGGAGGAGCAGGGAGACAGGCTGCAGGGAGACAGGCTGCAGGGAGACAGGCTGCAGGAGGAGCAGGGAGACAGGCTGCTGGAGGAGCAGGGAGACAGGCTGCAGGGAGACAGGCTGCTGGAGGAGCAGGGAGACAGGCTGCAGGGAGACAGGCTGCAGGAGGAGCAGGGAGACAGGCTGCAGGAGGAGCAGGGAGACAGGCTGGAGGAGGACTCAGACTCCGAGATGAAGGCAGAGGACAGTCAGCAGGAGGAGTTTGATGATGATTACCTGAGGGAGGTGGAGAAGGAGCTGACGGAGGAGGAGAAACAGAGTCGCCGGCAGCAGAGTTTAACTCTGAAGGAAAAGGGCAACAGCCAGTTTAAAGCTGGAGACTGGGCGGAGGCTGAGCGGAGCTACACAGAGGCGTTGGGTTTCTGTCCGGTCTGTTTCAGCCGAGAGAGAGCCGTGCTGTTCTCCAACAGAGCTGCTGCCAGACTGCACCTGGAGCTGAAGGACTCGGCGATCTCCGACTGCTCCAGAGCGATAGAGCTGAACCCAGACTACGTGCGGGCGCTGCTGAGGAGGGCCGAGCTGTACGAGCAGACTGAGAAGCTGGACGAGGCTCTGGAGGACTACAAGAAGGTTCTGGACCTGGACCGGAACCAGACCAGCGCCAGACAGGCCTGCATGaggCTGCCTCAGCAGATTCAGGAGAGAAATGAGAAGCTGAAGGAGGAGATGCTGAgtaaGCTGAAGGACCTGGGGAACATGGTGCTGAGACCGTTCGGTCTCTCCACCAACAACTTCCAGGTCAACCAGGACGCCGGCACCGGCTCGTACTCCATCAACTTCGTCCAGAACCCCAACAATAACAACAGATGACATCACACGGCCAGCGATGACATCACAGCCCTGCAGGCAGATTGATTAGTTCCCTGTTTGTGTTGTTTCCTTCAGGAGAGTCAACCACAgagatttgtttttgtatttaagCTGTTTGAATAAAGTTAGTTTGAATCCTGA

Function

GO: NA

KEGG:

id description
K24926 TTC1; tetratricopeptide repeat protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219581 lncRNA downstream 16023 543704 ~ 554212 (-) False LOC120544218
TU219584 lncRNA downstream 16023 543704 ~ 554212 (-) True LOC120544218
TU219579 lncRNA downstream 24087 543704 ~ 546148 (-) False LOC120544218
TU219669 lncRNA upstream 12919 591768 ~ 600857 (-) True G162262
TU219721 lncRNA upstream 97816 676665 ~ 683561 (-) True G162293
TU219723 lncRNA upstream 128610 707459 ~ 708067 (-) True G162295
TU219700 lncRNA upstream 176872 755721 ~ 826383 (-) True G162278
TU219736 lncRNA upstream 185914 764763 ~ 765382 (-) True G162306
XM_039777779.1 mRNA downstream 1526 560344 ~ 568709 (-) False pfdn1
XM_039777778.1 mRNA downstream 1526 560344 ~ 568709 (-) True pfdn1
XM_039777841.1 mRNA downstream 11313 544282 ~ 558922 (-) False LOC120544218
XM_039777730.1 mRNA downstream 33283 508137 ~ 536952 (-) True oatx
XM_039777723.1 mRNA downstream 68131 473518 ~ 502104 (-) True pwwp2a
XM_039777843.1 mRNA upstream 12185 591034 ~ 632939 (-) True tmprss15
XM_039777844.1 mRNA upstream 57805 636654 ~ 663746 (-) True LOC120544220
XM_039777722.1 mRNA upstream 115416 694265 ~ 727005 (-) True LOC120544137
XM_039777771.1 mRNA upstream 199719 778568 ~ 783234 (-) True LOC120544167
XM_039777755.1 mRNA upstream 227302 806151 ~ 815589 (-) True LOC120544156
TU219576 other downstream 11343 547619 ~ 558892 (-) False LOC120544218
TU219661 other downstream 96266 471092 ~ 473969 (-) False pwwp2a
TU219544 other downstream 432848 124348 ~ 137387 (-) False LOC120544212
TU219526 other downstream 469543 94636 ~ 100692 (-) False ndufa2
TU219519 other downstream 546798 21716 ~ 23437 (-) True G162166
TU219748 other upstream 207922 786771 ~ 794731 (-) True G162311
TU219808 other upstream 538224 1117073 ~ 1118688 (-) True G162352
TU219825 other upstream 613953 1192802 ~ 1310616 (-) True G162358
TU219834 other upstream 617264 1196113 ~ 1201434 (-) True G162359
TU219891 other upstream 779337 1358186 ~ 1358523 (-) True G162396

Expression Profile