RNA id: TU219700


Basic Information

Item Value
RNA id TU219700
length 219
lncRNA type read_through
GC content 0.48
exon number 2
gene id G162278
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 755721 ~ 826383 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacacacacacacacacacagagacacatacagagacacacacacacagagacacacacacacagagacacacacacatacacacacacacacacatacacacacacacacacacac

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219723 lncRNA downstream 47654 707459 ~ 708067 (-) True G162295
TU219721 lncRNA downstream 72160 676665 ~ 683561 (-) True G162293
TU219669 lncRNA downstream 154864 591768 ~ 600857 (-) True G162262
TU219668 lncRNA downstream 163662 552398 ~ 592059 (-) True G162261
TU219584 lncRNA downstream 201509 543704 ~ 554212 (-) True LOC120544218
TU219756 lncRNA upstream 2712 829095 ~ 833983 (-) True LOC120544221
TU219758 lncRNA upstream 17138 843521 ~ 872987 (-) True G162318
TU219702 lncRNA upstream 35007 861390 ~ 889809 (-) True G162280
TU219760 lncRNA upstream 51251 877634 ~ 898360 (-) True G162320
TU219761 lncRNA upstream 61946 888329 ~ 890410 (-) False chm
XM_039777722.1 mRNA downstream 28716 694265 ~ 727005 (-) True LOC120544137
XM_039777844.1 mRNA downstream 91975 636654 ~ 663746 (-) True LOC120544220
XM_039777843.1 mRNA downstream 122782 591034 ~ 632939 (-) True tmprss15
XM_039777743.1 mRNA downstream 176872 570235 ~ 578849 (-) False ttc1
XM_039777742.1 mRNA downstream 176872 570235 ~ 578849 (-) True ttc1
XM_039777845.1 mRNA upstream 2712 829095 ~ 844858 (-) False LOC120544221
XM_039777848.1 mRNA upstream 33549 859932 ~ 890362 (-) True chm
XM_039777784.1 mRNA upstream 157011 983394 ~ 983728 (-) True LOC120544177
XM_039777772.1 mRNA upstream 296996 1123379 ~ 1126081 (-) True LOC120544169
XM_039777785.1 mRNA upstream 396465 1222848 ~ 1243164 (-) True nipal4
TU219693 other downstream 183719 570252 ~ 572002 (-) False ttc1
TU219576 other downstream 196829 547619 ~ 558892 (-) False LOC120544218
TU219661 other downstream 281752 471092 ~ 473969 (-) False pwwp2a
TU219544 other downstream 618334 124348 ~ 137387 (-) False LOC120544212
TU219526 other downstream 655029 94636 ~ 100692 (-) False ndufa2
TU219808 other upstream 290690 1117073 ~ 1118688 (-) True G162352
TU219825 other upstream 366419 1192802 ~ 1310616 (-) True G162358
TU219834 other upstream 369730 1196113 ~ 1201434 (-) True G162359
TU219891 other upstream 531803 1358186 ~ 1358523 (-) True G162396
TU219894 other upstream 557604 1383987 ~ 1424401 (-) False G162398

Expression Profile