RNA id: TU219808


Basic Information

Item Value
RNA id TU219808
length 424
RNA type TUCP
GC content 0.41
exon number 2
gene id G162352
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 1117073 ~ 1118688 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacactaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacactaaaggtcctgattatttacatggagtctggtggagatgtgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacatgctaaaagtcctgattatttacatggagtctggtggaaatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatgtgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatggtggctctatacacgctaaaagtcctgattatttacatggag

Function

GO:

id name namespace
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko04146 Peroxisome
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219789 lncRNA downstream 55675 1014431 ~ 1061398 (-) True G162340
TU219791 lncRNA downstream 55675 1061030 ~ 1061398 (-) False G162340
TU219785 lncRNA downstream 92545 1021448 ~ 1024528 (-) False G162339
TU219786 lncRNA downstream 94169 1019296 ~ 1022904 (-) True G162339
TU219794 lncRNA downstream 103729 1013009 ~ 1013344 (-) True G162343
TU219810 lncRNA upstream 9698 1128386 ~ 1129003 (-) True G162354
TU219814 lncRNA upstream 30115 1148803 ~ 1161187 (-) True G162357
TU219847 lncRNA upstream 50106 1168794 ~ 1169404 (-) True G162363
TU219846 lncRNA upstream 50346 1169034 ~ 1169404 (-) False G162363
TU219827 lncRNA upstream 74114 1192802 ~ 1280945 (-) False G162358
XM_039777784.1 mRNA downstream 133345 983394 ~ 983728 (-) True LOC120544177
XM_039777848.1 mRNA downstream 226711 859932 ~ 890362 (-) True chm
XM_039777845.1 mRNA downstream 272215 829095 ~ 844858 (-) False LOC120544221
XM_039777755.1 mRNA downstream 301484 806151 ~ 815589 (-) True LOC120544156
XM_039777771.1 mRNA downstream 333839 778568 ~ 783234 (-) True LOC120544167
XM_039777772.1 mRNA upstream 4691 1123379 ~ 1126081 (-) True LOC120544169
XM_039777785.1 mRNA upstream 104160 1222848 ~ 1243164 (-) True nipal4
XM_039777783.1 mRNA upstream 125838 1244526 ~ 1246965 (-) True ins
XM_039777782.1 mRNA upstream 299379 1418067 ~ 1422208 (-) True LOC120544175
XM_039777773.1 mRNA upstream 368715 1487403 ~ 1490956 (-) True LOC120544170
TU219748 other downstream 322342 786771 ~ 794731 (-) True G162311
TU219693 other downstream 545071 570252 ~ 572002 (-) False ttc1
TU219576 other downstream 558181 547619 ~ 558892 (-) False LOC120544218
TU219661 other downstream 643104 471092 ~ 473969 (-) False pwwp2a
TU219544 other downstream 979686 124348 ~ 137387 (-) False LOC120544212
TU219825 other upstream 74114 1192802 ~ 1310616 (-) True G162358
TU219834 other upstream 77425 1196113 ~ 1201434 (-) True G162359
TU219891 other upstream 239498 1358186 ~ 1358523 (-) True G162396
TU219894 other upstream 265299 1383987 ~ 1424401 (-) False G162398
TU219896 other upstream 318565 1437253 ~ 1440818 (-) True G162399

Expression Profile