RNA id: TU221286


Basic Information

Item Value
RNA id TU221286
length 993
RNA type TUCP
GC content 0.53
exon number 3
gene id G163315
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 4334843 ~ 4820499 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctAGAcggccgtagctgtatcccctctagacggccgtagctgtatcccctctagacggccgtagctgtatcccctctagacggccgtagctgtatcccctctaGACAcagccgtagctgtatcccctctaGACAcagctgtagctgtatcccctctacacggctgtagctgtatcccctctacacggccgtagctgtatcccctctacacggccgtagctgtatcccctctagacggccgtagctgtatcccctctagacggccgtagctgtatcccctctagacggctgtagctgtatcccctctagacggctgtagctgtatcccctctacacggccgtagctgtatcccctctaCACACAACCACGAAAAGTGAGGCTGAGaggacaggaagtgatgtcagccaagtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctctgtgcgtgtgtctctctatgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtccatctgtgtgtgtgtgtgtgtgtgtgtgtctcagtctctctgtgtgtgtctgtctctgtgcgtctccgtctgtgtgcgtgtgtgtgtgtctctctctgtgtgtgtgtgtctctctgtgtgtgtgtgtgtctctgtctgtgtgtgtgtctctgtctgtgtgtgtctctgtctgtgtgtgtgtgtgtctatatgtgtgtctgtgtgtgtgtctgtgtctctgtctgtctgtgtgtgtgtgtgtgtctgtctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtctctgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctctgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221303 lncRNA downstream 325 4258099 ~ 4366174 (-) False G163316
TU221313 lncRNA downstream 325 4258099 ~ 4366174 (-) False G163316
TU221314 lncRNA downstream 8424 4257985 ~ 4358075 (-) False G163316
TU221352 lncRNA downstream 40579 4238728 ~ 4325920 (-) False G163342
TU221353 lncRNA downstream 40579 4324930 ~ 4325920 (-) True G163342
TU221280 lncRNA upstream 4545 4406286 ~ 4415431 (-) False G163315
TU221289 lncRNA upstream 12918 4414659 ~ 4415431 (-) False G163315
TU221329 lncRNA upstream 40248 4441989 ~ 4443562 (-) True taf9
TU221417 lncRNA upstream 157763 4559504 ~ 4560299 (-) False G163377
TU221418 lncRNA upstream 157763 4559504 ~ 4580903 (-) True G163377
XM_039778441.1 mRNA downstream 56584 4304926 ~ 4309915 (-) True rbmx2
XM_039778414.1 mRNA downstream 106340 4249126 ~ 4260159 (-) True LOC120544550
XM_039778422.1 mRNA downstream 158506 4198358 ~ 4207993 (-) True LOC120544557
XM_039776849.1 mRNA downstream 213024 4148512 ~ 4153475 (-) False rnasekb
XM_039776846.1 mRNA downstream 229465 4127789 ~ 4137034 (-) True LOC120543691
XM_039778421.1 mRNA upstream 40496 4442237 ~ 4442656 (-) False taf9
XM_039778426.1 mRNA upstream 64103 4465844 ~ 4466381 (-) True LOC120544562
XM_039778424.1 mRNA upstream 66459 4468200 ~ 4468934 (-) True LOC120544559
XM_039778437.1 mRNA upstream 71516 4473257 ~ 4474025 (-) True LOC120544570
XM_039778436.1 mRNA upstream 90379 4492120 ~ 4493331 (-) False LOC120544568
TU221342 other downstream 62451 4302566 ~ 4304048 (-) True G163334
TU221326 other downstream 79703 4281773 ~ 4286796 (-) False LOC120544555
TU221271 other downstream 213036 4149841 ~ 4153463 (-) False rnasekb
TU221205 other downstream 492384 3870325 ~ 3874115 (-) True G163259
unassigned_transcript_913 other downstream 825476 3540951 ~ 3541023 (-) True trnav-uac_20
TU221394 other upstream 89264 4491005 ~ 4493351 (-) True LOC120544568
TU221486 other upstream 333587 4735328 ~ 4740789 (-) False LOC120544563
unassigned_transcript_924 other upstream 354920 4756661 ~ 4756732 (-) True trnad-guc_9
unassigned_transcript_925 other upstream 356697 4758438 ~ 4758509 (-) True trnad-guc_10
unassigned_transcript_926 other upstream 359685 4761426 ~ 4761496 (-) True trnag-gcc_2

Expression Profile