RNA id: TU221291


Basic Information

Item Value
RNA id TU221291
length 795
RNA type TUCP
GC content 0.51
exon number 4
gene id G163315
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 4334843 ~ 4820499 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cGGCTGACcggtgaagtgtgtgtgtgtgtgtgtctgtgtgcgtgtatctgtgtgcgcgcgtgcctgtctgtctgtctgtctgtctgtgtgcctctgtgtgtgtgtgtgtctgtgtgtcagtctgtctctgtgtgcctgtgcgtgtctgtctgtctgtctgtctgtgtgtgtgtctctgtatttgtgtgcatgtgtgtgtctctgtgtgtgtgtgtgtgtctctgtgtatgtgtgtgtgtcctccccTCGTAGCcagtctgtttgtctgtgtgtgtctgtgtctctttgtgtgtgtccatgtgtgtgtgtctctctgtgtgtctctctgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtcctccccTCGTAGCCAgtctgttggtctgtctgtgtgtgtgtgtttgtctgtgtgtgcatgcttgcgtctctgtgtgtgtccatgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtctctctgtgtgtgtgtctctgtgtctctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtctctctgtgtgtgtctctctgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtctccatgtgtgtgtgtctctgtgtgtgtgtctctgtgtgtgtgtctctgtgtgtgtgtctctgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221352 lncRNA downstream 8923 4238728 ~ 4325920 (-) False G163342
TU221353 lncRNA downstream 8923 4324930 ~ 4325920 (-) True G163342
TU221354 lncRNA downstream 8923 4324930 ~ 4325920 (-) False G163342
TU221261 lncRNA downstream 20225 4168202 ~ 4314618 (-) True G163301
XR_005636521.1 lncRNA downstream 49082 4285476 ~ 4285761 (-) True LOC120544588
TU221329 lncRNA upstream 26558 4441989 ~ 4443562 (-) True taf9
TU221417 lncRNA upstream 144073 4559504 ~ 4560299 (-) False G163377
TU221418 lncRNA upstream 144073 4559504 ~ 4580903 (-) True G163377
TU221420 lncRNA upstream 144073 4559504 ~ 4580360 (-) False G163377
TU221423 lncRNA upstream 144073 4559504 ~ 4580360 (-) False G163377
XM_039778441.1 mRNA downstream 24928 4304926 ~ 4309915 (-) True rbmx2
XM_039778414.1 mRNA downstream 74684 4249126 ~ 4260159 (-) True LOC120544550
XM_039778422.1 mRNA downstream 126850 4198358 ~ 4207993 (-) True LOC120544557
XM_039776849.1 mRNA downstream 181368 4148512 ~ 4153475 (-) False rnasekb
XM_039776846.1 mRNA downstream 197809 4127789 ~ 4137034 (-) True LOC120543691
XM_039778421.1 mRNA upstream 26806 4442237 ~ 4442656 (-) False taf9
XM_039778426.1 mRNA upstream 50413 4465844 ~ 4466381 (-) True LOC120544562
XM_039778424.1 mRNA upstream 52769 4468200 ~ 4468934 (-) True LOC120544559
XM_039778437.1 mRNA upstream 57826 4473257 ~ 4474025 (-) True LOC120544570
XM_039778436.1 mRNA upstream 76689 4492120 ~ 4493331 (-) False LOC120544568
TU221342 other downstream 30795 4302566 ~ 4304048 (-) True G163334
TU221326 other downstream 48047 4281773 ~ 4286796 (-) False LOC120544555
TU221271 other downstream 181380 4149841 ~ 4153463 (-) False rnasekb
TU221205 other downstream 460728 3870325 ~ 3874115 (-) True G163259
unassigned_transcript_913 other downstream 793820 3540951 ~ 3541023 (-) True trnav-uac_20
TU221394 other upstream 75574 4491005 ~ 4493351 (-) True LOC120544568
TU221486 other upstream 319897 4735328 ~ 4740789 (-) False LOC120544563
unassigned_transcript_924 other upstream 341230 4756661 ~ 4756732 (-) True trnad-guc_9
unassigned_transcript_925 other upstream 343007 4758438 ~ 4758509 (-) True trnad-guc_10
unassigned_transcript_926 other upstream 345995 4761426 ~ 4761496 (-) True trnag-gcc_2

Expression Profile