RNA id: TU221394


Basic Information

Item Value
RNA id TU221394
length 2323
RNA type TUCP
GC content 0.43
exon number 2
gene id LOC120544568
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 4491005 ~ 4493351 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAAGAGGCGTCCGGGATGTGACTTTGTTATCTGTTTCAGGACTCCAAACCCGAAACAAACATGCCAGCAGAAGCCACCGTCAAAGCGCCCAAGAAGGGCTCCAAGAAAGCCGTGACCAAGACCGCCGCCAAGGGCGgcaagaagaggagaaagagcaggaaggagagctacGCCATCTACGTGTACAAGGTGCTGAAGCAGGTCCACCCCGACACCGGCATCTCCTCCAAGGCCATGGGCATCATGAACTCGTTTGTGAGCGACATCTTTGAGCGCATCGCCGGCGAGGCTTCCCGTCTGGCTCACTACAACAAGCGCTCCACCATCACTTCCCGCGAGATCCAGACCGCCGTGAGGCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCAAGGCCGTCACCAAGTACACCAGCTCCAAGTAAACCTCCCGCTGCTGTAATCCACCAAACCAacggctcttttaagagccacacACTTCTTCTTAAAGAGCAACGTTTCAACCAGTCATGTGTTTAGAAACAAATGatcgtttttgtcacttttatttcTTGAAggtaaactttttatttttatagtggTTATTGTGTTTATTTGAAGTTTTCTGCGCTTTTACCCACTACCACCAGTATACACTTACACCTTTACTATTTTTGTGGCAACTTTTTACTTATACTGCTTACTTTTTAACATGCATATCCTACTCTTTACATTTTACAGAATTGGCTCATTACTTTAGTTTCAAacaatttcactggagttaccgttattttTCAGGTCATAAATACTAGTGATGGGCATTCCGGCTCTTTTTCGTGAGCCGGCTCGTTTGACTCAGCTCACtgaaaagagccggctcttttggctcacaaacggctctttaaaaaaattaatgttttgactatgataggtgtgaaaaacaattgtaattaaattattaaatgaaatgaaatgagacTGCGTTGCTGTGGGCCGCGGATTAGGCCTACTTGACTGAGTGGATACATCTCCACGTGAGGTGCTGGCTCCAGTCGCTCCACCACCGTCACTAGCGGGACCGCAAGTTTCTCGAAGCTCCGCTAGCTTCACAGTTGGGTGCACAGTTCGCATATGCCGGTGTAGGTTGTACGTAGAACCGGCTTTATATGAGATTTTGTTTTGGCAAATTCTACACTGTGCTTTAACATTGTCTACATCATTAAGATGATTCCAAATGCTGCTGTGCTTCCGACtcattttcctgcttttgttttgttttcagagctgtttttcctctcctctgtcctctcctccgagtttgactgtgtgtgtgtgtgtgtgtgtgtgtgatggcttggcccctccctcatgccgtataattggttgacaccttatgtatgattgacaggaacagaatgtgaggctgatcagacagtcgaaactaatgtgtgcctatataattttttttgttctttgaattagtcaattattttaaataaaataaaattcactcattatttcattattactaaataatttaatttctataggctatatttttaaaaatagagtcggctcttcggatatgcgagccagctcccgtcattcacctacaagagccggctcttagagccgactcattcgcgaacgacccatcactaataaatactgaattcaatctaattggatgggaatatactgtacgtTGCACTTGACGCACCACTACAGGACGACTCCACAGATTTCGCGGCAAATCatttgcagcttgatggtggtaacgttagcacacaGTAGTACGGatggcgacatgattgaaaatgaagatgcagcagacaagcagcaagacattcccaatctgagagagatgtttcaTAATAAGGCATCAAGAATGTGCTGCAAAACTCAAAGTATGGAAAACTTCTTaatgtctgtttagtaattcatattttatcctttattttctttccagaagccatatttgagcacacacacgcatgcatctagattcctttaaatgttaaggggaagattaaaaaagagaaacaatctgtgaattctcacagaatcacaactgAATTCAGTcaatcttattaacctggagtcccagtctctgtcacaatactcatatatgtgatgttttaggcctattggctGACATCCATTTTAAATGTAGGCAATGTCATATAAAGAGCCTGTTTTTCCATGTctactgaagtttctcagcttgcactctagtaacatttgtgtggtccaggtagctttgcataaaaaatggttgtcattcgcaaaaGCTACGTTtgcttttatactttaagtttccaagcctgtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221329 lncRNA downstream 47443 4441989 ~ 4443562 (-) True taf9
TU221319 lncRNA downstream 70436 4341560 ~ 4420569 (-) True G163317
TU221277 lncRNA downstream 75574 4366499 ~ 4415431 (-) False G163315
TU221283 lncRNA downstream 75574 4395259 ~ 4415431 (-) False G163315
TU221292 lncRNA downstream 75574 4395259 ~ 4415431 (-) False G163315
TU221417 lncRNA upstream 66153 4559504 ~ 4560299 (-) False G163377
TU221418 lncRNA upstream 66153 4559504 ~ 4580903 (-) True G163377
TU221420 lncRNA upstream 66153 4559504 ~ 4580360 (-) False G163377
TU221423 lncRNA upstream 66153 4559504 ~ 4580360 (-) False G163377
TU221419 lncRNA upstream 66678 4560029 ~ 4580903 (-) False G163377
XM_039778437.1 mRNA downstream 16980 4473257 ~ 4474025 (-) True LOC120544570
XM_039778424.1 mRNA downstream 22071 4468200 ~ 4468934 (-) True LOC120544559
XM_039778426.1 mRNA downstream 24624 4465844 ~ 4466381 (-) True LOC120544562
XM_039778421.1 mRNA downstream 48349 4442237 ~ 4442656 (-) False taf9
XM_039778441.1 mRNA downstream 181090 4304926 ~ 4309915 (-) True rbmx2
XM_039778447.1 mRNA upstream 1168 4494519 ~ 4494887 (-) True LOC120544579
XM_039778435.1 mRNA upstream 108344 4601695 ~ 4602995 (-) True LOC120544567
XM_039778444.1 mRNA upstream 110704 4604055 ~ 4604643 (-) True LOC120544576
XM_039778434.1 mRNA upstream 133803 4627154 ~ 4628382 (-) True LOC120544566
XM_039778415.1 mRNA upstream 148486 4641837 ~ 4694616 (-) True LOC120544552
TU221291 other downstream 75574 4334843 ~ 4415431 (-) False G163315
TU221281 other downstream 75574 4367059 ~ 4415431 (-) False G163315
TU221286 other downstream 89264 4366499 ~ 4401741 (-) True G163315
TU221342 other downstream 186957 4302566 ~ 4304048 (-) True G163334
TU221326 other downstream 204209 4281773 ~ 4286796 (-) False LOC120544555
TU221486 other upstream 241977 4735328 ~ 4740789 (-) False LOC120544563
unassigned_transcript_924 other upstream 263310 4756661 ~ 4756732 (-) True trnad-guc_9
unassigned_transcript_925 other upstream 265087 4758438 ~ 4758509 (-) True trnad-guc_10
unassigned_transcript_926 other upstream 268075 4761426 ~ 4761496 (-) True trnag-gcc_2
unassigned_transcript_927 other upstream 268711 4762062 ~ 4762132 (-) True trnag-gcc_3

Expression Profile